Locus 2937

Sequence ID 3R_DroMel_CAF1
Location 7,868,473 – 7,868,593
Length 120
Max. P 0.978711
window4727

overview

Window 7

Location 7,868,473 – 7,868,593
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.56
Mean single sequence MFE -26.07
Consensus MFE -21.48
Energy contribution -21.96
Covariance contribution 0.48
Combinations/Pair 1.06
Mean z-score -2.12
Structure conservation index 0.82
SVM decision value 1.82
SVM RNA-class probability 0.978711
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7868473 120 - 27905053
AAACUCCCAAUUUAUUAAAGGAGAUAAAUUGCCACACGAGAUCCAUUCUCACCACGAAUGAAAAAUACCCAGUGUUCAGCUAUUUUUUAUCGUGUUCCAAAAAAAACUGCUUGGAGGCCA
...((((............)))).......(((....((((.....))))..(((((.((((((((....(((.....)))))))))))))))).(((((..........)))))))).. ( -25.20)
>DroSec_CAF1 364 119 - 1
AAACUCCCAAUUUAUUAAAGGAGAUAAAUUGCCACCCGAGAUCCAUUCUCACCGCGAAUGAAAAAUAGCCAGUGUUCAGCUAUUUUUUAUCGUGUCCCAAA-AAAACCGCGUGGAGGCCA
.....(((((((((((......)))))))))((((.(((((.....))))..(((((.(((((((((((.........)))))))))))))))).......-......).)))).))... ( -31.10)
>DroSim_CAF1 366 120 - 1
AAACUCCCAAUUUAUUAAAGGAGAUAAAUUGCCACCCGAGAUCCAUUCUCACCGCGAAUGAAAAAUACCCAGUGUUCAGCUAUUUUUUAUCGUGUCCCAAAAAAAACCGCUUGGAGGCCA
...(((((((((((((......)))))))))......((((.....))))..(((((.((((((((....(((.....))))))))))))))))..................)))).... ( -24.30)
>DroEre_CAF1 368 119 - 1
AAACUCCCAAUUUAUUAAAAGAGAUAAAUUGCCAACCGAGAUCCAUUCUCACCGCUACUGAAACACACCCAGUGUUCGGCUAUUUUUUAUCAUGUCUCAAA-AAAAACGCUUGGAGGCCA
...((((.............(((((((((.(((....((((.....)))).........(((.(((.....))))))))).)))........))))))...-..........)))).... ( -22.67)
>DroYak_CAF1 371 119 - 1
AAACUCUCAAUUUAUUAACAGAGAUAAAUUGCCACCCGAGAUUCAUUCUCACCGCGAGUGAAAAAUACCCAGUGUUCGGCUAUUUUUUAUCGUGUCCCAAA-AAAACCGCUUGGAGGCCA
........((((((((......))))))))(((.((.((((.....))))..(((((.(((((((((.((.......)).)))))))))))))).......-..........)).))).. ( -27.10)
>consensus
AAACUCCCAAUUUAUUAAAGGAGAUAAAUUGCCACCCGAGAUCCAUUCUCACCGCGAAUGAAAAAUACCCAGUGUUCAGCUAUUUUUUAUCGUGUCCCAAA_AAAACCGCUUGGAGGCCA
...(((((((((((((......)))))))))......((((.....))))..(((((.(((((((((.(.........).))))))))))))))..................)))).... (-21.48 = -21.96 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:12 2006