| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,864,435 – 7,864,525 |
| Length | 90 |
| Max. P | 0.606128 |
| Location | 7,864,435 – 7,864,525 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.47 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -15.62 |
| Energy contribution | -15.82 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7864435 90 + 27905053 AGGGCAAAAGCCGAGUGGCCCACCAGCCCCACCAAAA-------------UCCGGGGCUGAACCAGUCAAUUUGUAGGCUUUAAGCUGGCGCAGCUC---ACUGAA-------------- .((((....(((((.(((.....(((((((.......-------------...)))))))..))).))........(((.....))))))...))))---......-------------- ( -32.20) >DroSec_CAF1 25262 90 + 1 AGGGCACAAGCAGAGUGGCCCACCAGUACCACCAAAA-------------ACCGGGGCUGAACCAGUCAAUUUGUAGGCUUUGAGCUGGCGCAGCUC---ACUGAA-------------- .((((((.......)).))))..((((....((....-------------...))(((((..((((((((..........)))).))))..))))).---))))..-------------- ( -28.10) >DroSim_CAF1 25577 90 + 1 AGGGCACAAGCAGAGUGGCCCACCAGCACCACCAAAA-------------ACCAGGGCUGAACCAGUCAAUUUGUAGGCUUUAAGCUGGCGCAGCUC---ACUGAA-------------- .((((((.......)).))))................-------------....((((((..(((((......(....).....)))))..))))))---......-------------- ( -24.70) >DroEre_CAF1 25464 91 + 1 AGGGCAAAAGCAGAGUGGCGCACCAG--CCGCCAAAA-------------ACCGGGUCUGAACCAGUCAAUUUGUUGGCUUAAAGCUGGCGCAGCUCAGCACUGAA-------------- .((((....((......))((.((((--(.(((((..-------------....((.(((...)))))......))))).....))))).)).)))).........-------------- ( -27.40) >DroYak_CAF1 25831 88 + 1 AGGGCAAAACCAGAGAGGCCCACCAG--CCACCAAAA-------------ACCGGGGCUGAACCAGUCAAUUUGUUGGCUUAAAGCUGGCGCAGCUC---ACUGAA-------------- .((((....((((..(((((...(((--((.((....-------------...)))))))...(((.....)))..)))))....))))....))))---......-------------- ( -28.00) >DroAna_CAF1 27082 115 + 1 AGGCCACUUUCCGGGUGACCUGGCAGU--UGCCAAAAAAAUAAAAAAAAAAAACAGGCUGAACCAGUCAAUUUGCAGGCUUUAAGCGGCUGCGGUCU---ACUAAAAUAGAAAAAAAUGG (((((.......((....))..(((((--(((.......................((.....))((((........))))....)))))))))))))---.................... ( -27.70) >consensus AGGGCAAAAGCAGAGUGGCCCACCAG__CCACCAAAA_____________ACCGGGGCUGAACCAGUCAAUUUGUAGGCUUUAAGCUGGCGCAGCUC___ACUGAA______________ .((((............)))).................................((((((..(((((......(....).....)))))..))))))....................... (-15.62 = -15.82 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:09 2006