Locus 2933

Sequence ID 3R_DroMel_CAF1
Location 7,863,369 – 7,863,463
Length 94
Max. P 0.828375
window4719

overview

Window 9

Location 7,863,369 – 7,863,463
Length 94
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 71.74
Mean single sequence MFE -29.03
Consensus MFE -12.52
Energy contribution -12.13
Covariance contribution -0.39
Combinations/Pair 1.16
Mean z-score -1.94
Structure conservation index 0.43
SVM decision value 0.71
SVM RNA-class probability 0.828375
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7863369 94 - 27905053
---UGUGAGUGUG-UGUGGAUGGAUGUACGUUUGGAUGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUUGAGCACC-CAACACAUGUU----------------UAUGCAUA
---.(((((..((-(((.((((......))))((((((((((((........)))))))))..((.((....))))..)-)))))))..))----------------)))..... ( -26.00)
>DroPse_CAF1 26175 101 - 1
---GGUAAAUGUU-----------UGUGCGGGAGGGAGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUGGAGCAUCGCCACACAUGUUGGCCAAUUUAUGUGCUUAUGUACA
---(((..((((.-----------((.(((((((((.(((((((........)))))))...).)))).(.....).)))))).))))....)))......(((((....))))) ( -27.90)
>DroEre_CAF1 24351 92 - 1
---UGCGAGUGU-G--UGGAUGGAUGUGUGUUUGGAUGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUUGAGCACC-CAACACAUGUU----------------UAUGCAUA
---........(-(--((.(((((((((((((.(((((((((((........)))))))))..((.((....)))).))-.))))))))))----------------))).)))) ( -31.20)
>DroYak_CAF1 24725 97 - 1
UUGUGCGUGUGU-GAAUGGAUGGAUGUGUGUUUGGAUGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUUGAGCACC-CAACACAUGUU----------------UAUGCAUA
............-..(((.(((((((((((((.(((((((((((........)))))))))..((.((....)))).))-.))))))))))----------------))).))). ( -30.70)
>DroAna_CAF1 26078 85 - 1
---UGCCAGUGG-GCACGGGAGG---------CGGAUGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUUGAGCACC-CAACACAUGUU----------------UAUGUAUA
---((((....)-)))...((((---------((.(((((((((........))))))))).)))))).((((......-))))((((...----------------.))))... ( -30.50)
>DroPer_CAF1 26139 101 - 1
---GGUAAAUGUU-----------UGUGCGGGAGGGAGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUGGAGCAUCGCCACACAUGUUGGCCAAUUUAUGUGCUUAUGUACA
---(((..((((.-----------((.(((((((((.(((((((........)))))))...).)))).(.....).)))))).))))....)))......(((((....))))) ( -27.90)
>consensus
___UGCGAGUGU____UGGAUGG_UGUGCGUUUGGAUGAGUGUCAUUAGCAAGACAUUUAUACGCCUCAGUUGAGCACC_CAACACAUGUU________________UAUGCAUA
........((((.....................(((((((((((........)))))))))...))...((((.......))))))))........................... (-12.52 = -12.13 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:05 2006