Locus 2932

Sequence ID 3R_DroMel_CAF1
Location 7,860,542 – 7,860,645
Length 103
Max. P 0.500000
window4718

overview

Window 8

Location 7,860,542 – 7,860,645
Length 103
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 83.82
Mean single sequence MFE -29.43
Consensus MFE -22.66
Energy contribution -22.33
Covariance contribution -0.33
Combinations/Pair 1.17
Mean z-score -1.56
Structure conservation index 0.77
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7860542 103 - 27905053
UGUCUUUGUCCAAUCUAGGGCAUCAUUUGUUUUGCAGAUUUCUUCCGGCUCAUUUUUGGCUGGCACUUCAAUAGUCGUUGGUCUUUCGGAUUGGCCAGAUGAC
.(((((((.(((((((.((((...(((((.....)))))........))))......(((..(((((.....))).))..)))....))))))).)))).))) ( -29.20)
>DroEre_CAF1 21630 103 - 1
GCUCUUUGUCCAAUCCAGAGCCUCCUGUGUUUUGCACAUUUCCUCCGGCUCAUUCUUGGAUGGCUCUAUAAAAUUGAUUGGGUUUUCGGAUUGGCCAGAUGAC
..((((((.((((((((((((((((((((.....))))...((...)).........))).))))))........((........))))))))).)))).)). ( -30.20)
>DroYak_CAF1 21883 103 - 1
GUUCUUUGUCCAAUCCAUGGCCUCCUGUGUUUUGCAGAUUUGCUCCGGCUCAUUCUUGGCUGGCUCUUGAAAAGUGAUUGGGUUCUCGGAUUGGCCAGCUGAC
(((..(((.((((((((..((((.((((.....))))..(..(((((((.((....))))))).........))..)..))))..).))))))).)))..))) ( -28.90)
>consensus
GCUCUUUGUCCAAUCCAGGGCCUCCUGUGUUUUGCAGAUUUCCUCCGGCUCAUUCUUGGCUGGCUCUUCAAAAGUGAUUGGGUUUUCGGAUUGGCCAGAUGAC
..((((((.(((((((..((.(((.((((.....))))......(((((.((....)))))))................))).))..))))))).)))).)). (-22.66 = -22.33 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:04 2006