Locus 2931

Sequence ID	3R_DroMel_CAF1
Location	7,860,364 – 7,860,462
Length	98
Max. P	0.914595

overview

Window 6

Location	7,860,364 – 7,860,462
Length	98
Sequences	6
Columns	111
Reading direction	forward
Mean pairwise identity	74.01
Mean single sequence MFE	-33.70
Consensus MFE	-16.28
Energy contribution	-17.06
Covariance contribution	0.78
Combinations/Pair	1.29
Mean z-score	-2.08
Structure conservation index	0.48
SVM decision value	1.10
SVM RNA-class probability	0.914595
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7860364 98 + 27905053
CAGAUACCAAGGAUGUGAUUCGUGCCCAGGCCAUUCGCACCUUAAAGGAGCAAAGUUGCCCCUC-------------AAGCGAGGAUAACUACAACGGACGGAUCAAUCCC
..........((((.((((((((.((..(((..((.((.((.....)).)).))...)))((((-------------....))))...........)))))))))))))). ( -29.40)
>DroSec_CAF1 21237 98 + 1
CAGAUCCCAAGGAUGUGAUACGUGCCCAGGCCAUCCGCUCUUUAAAGGAGCAAAGUUGCCCCUC-------------AAGCGAGGAUAACUACAACGGACGUAUCAAUCCC
..........((((.((((((((((....))...(((((((.....)))))..(((((..((((-------------....)))).))))).....)))))))))))))). ( -32.90)
>DroSim_CAF1 21544 98 + 1
CAGAUCCCAAGGAUGUGAUGCGUGCCCAGGCCAUCCGCUCCUUAAAGGAUCAAAGUUGCCCCUC-------------AAGCGAGGAUAACUACAACGGACGUAUCAAUCCC
..........((((.((((((((((....))...(((.(((.....)))....(((((..((((-------------....)))).)))))....))))))))))))))). ( -29.20)
>DroEre_CAF1 21452 98 + 1
CAGUUCCCAGGGAUGUGAUGCGCGCCCAGGCCAUCCGCUCCUUGAAGGAGCAAAGUUGUCCCUC-------------GAGCGAGGAUGACUACAACGGACGGAUCAAUCCC
.........(((((.((((.((.((....))..((((((((.....)))))..(((..(((.((-------------....)))))..))).....))))).))))))))) ( -37.30)
>DroYak_CAF1 21705 98 + 1
CAGUUCCCAGGGAUGUGAUGCGUGCGCAGGCCAUCCGCUCCCUAAAGGAGCAGAGCUGCCCCUC-------------CAGCGAGGAUGGCUACAACGGACGGAUCAAUCCC
.........(((((.((((.(((.((..(((((((((((((.....)))))...((((......-------------))))..))))))))....)).))).))))))))) ( -46.70)
>DroPer_CAF1 23189 104 + 1
CAGAAAGUGAAAAGGUUAUCGGAAGGCAGGUCCUCCGAUCGCUAAG-------AGCUACUCCCGAAGAUAUGUCCGGCAGCGGGGAGAGCAUGAAAGGGAGCUUCAAUUAU
..((((((.....(((.((((((.((.....)))))))).)))...-------.))).(((((.....((((((((....))).....)))))...))))).)))...... ( -26.70)
>consensus
CAGAUCCCAAGGAUGUGAUGCGUGCCCAGGCCAUCCGCUCCUUAAAGGAGCAAAGUUGCCCCUC_____________AAGCGAGGAUAACUACAACGGACGGAUCAAUCCC
..........((((.((((.((.((....))..((((((((.....)))))..((((...((((.................))))..)))).....))))).)))))))). (-16.28 = -17.06 +   0.78)

alignment

secondary structure

dotplot

Window 7

Location	7,860,364 – 7,860,462
Length	98
Sequences	6
Columns	111
Reading direction	reverse
Mean pairwise identity	74.01
Mean single sequence MFE	-35.93
Consensus MFE	-20.26
Energy contribution	-21.13
Covariance contribution	0.87
Combinations/Pair	1.34
Mean z-score	-1.71
Structure conservation index	0.56
SVM decision value	0.74
SVM RNA-class probability	0.838997
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7860364 98 - 27905053
GGGAUUGAUCCGUCCGUUGUAGUUAUCCUCGCUU-------------GAGGGGCAACUUUGCUCCUUUAAGGUGCGAAUGGCCUGGGCACGAAUCACAUCCUUGGUAUCUG
(((((((((.(((((...........((((....-------------))))(((...(((((.((.....)).)))))..)))..)).))).)))).)))))......... ( -31.10)
>DroSec_CAF1 21237 98 - 1
GGGAUUGAUACGUCCGUUGUAGUUAUCCUCGCUU-------------GAGGGGCAACUUUGCUCCUUUAAAGAGCGGAUGGCCUGGGCACGUAUCACAUCCUUGGGAUCUG
(((((((((((((((......(((((((..((((-------------((((((((....))))))))....)))))))))))...)).)))))))).)))))......... ( -38.00)
>DroSim_CAF1 21544 98 - 1
GGGAUUGAUACGUCCGUUGUAGUUAUCCUCGCUU-------------GAGGGGCAACUUUGAUCCUUUAAGGAGCGGAUGGCCUGGGCACGCAUCACAUCCUUGGGAUCUG
.((((......))))(((((.....(((((....-------------))))))))))...((((((..(((((...((((((....))...))))...))))))))))).. ( -32.50)
>DroEre_CAF1 21452 98 - 1
GGGAUUGAUCCGUCCGUUGUAGUCAUCCUCGCUC-------------GAGGGACAACUUUGCUCCUUCAAGGAGCGGAUGGCCUGGGCGCGCAUCACAUCCCUGGGAACUG
((((((((((((((((.....(((((((..((((-------------((((((((....)).))))))...))))))))))).)))))).).)))).)))))......... ( -39.30)
>DroYak_CAF1 21705 98 - 1
GGGAUUGAUCCGUCCGUUGUAGCCAUCCUCGCUG-------------GAGGGGCAGCUCUGCUCCUUUAGGGAGCGGAUGGCCUGCGCACGCAUCACAUCCCUGGGAACUG
(((((((((.(((.(((....(((((((((.(((-------------((((((((....))))))))))).))..)))))))..))).))).)))).)))))......... ( -49.70)
>DroPer_CAF1 23189 104 - 1
AUAAUUGAAGCUCCCUUUCAUGCUCUCCCCGCUGCCGGACAUAUCUUCGGGAGUAGCU-------CUUAGCGAUCGGAGGACCUGCCUUCCGAUAACCUUUUCACUUUCUG
.....(((((..........((((....(..((.(((((......))))).))..)..-------...))))((((((((......)))))))).....)))))....... ( -25.00)
>consensus
GGGAUUGAUCCGUCCGUUGUAGUUAUCCUCGCUU_____________GAGGGGCAACUUUGCUCCUUUAAGGAGCGGAUGGCCUGGGCACGCAUCACAUCCUUGGGAUCUG
(((((((((.((((((((((.....(((((.................))))))))))...((((((...)))))))))))((....))....)))).)))))......... (-20.26 = -21.13 +   0.87)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:03 2006