| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,853,295 – 7,853,399 |
| Length | 104 |
| Max. P | 0.812353 |
| Location | 7,853,295 – 7,853,399 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.75 |
| Mean single sequence MFE | -19.73 |
| Consensus MFE | -12.96 |
| Energy contribution | -13.02 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.812353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7853295 104 + 27905053 CGAUUUGA----GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUUUUUUUAUGGCCAAUCCCAUGCACUCUGACACUCACUCAUUCAGCUCCAAACUCCAAAC--------ACCAA .((..(((----((((.((..((((((((......))))))))......(((((......))))).....))))))))).)).....................--------..... ( -19.10) >DroSec_CAF1 14252 112 + 1 CGAUUUGA----GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUUUUUUUAUGGCCAAUCCCAUGCACUCUGACACUCACUCAUUCAGCUCCAAGCUCCAAACCCCAAAACAGCAA .((..(((----((((.((..((((((((......))))))))......(((((......))))).....))))))))).))....(((.....)))................... ( -20.60) >DroSim_CAF1 14452 112 + 1 CGAUUUGA----GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUUUUUUUAUGGCCAAUCCCAUGCACUCUGACACUCACUCAUUCAGCUCCAAGCUCCAAACCCCAAAACAGCAA .((..(((----((((.((..((((((((......))))))))......(((((......))))).....))))))))).))....(((.....)))................... ( -20.60) >DroEre_CAF1 14342 97 + 1 CGAUUUGA----GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUUUUUUUAUGGCCAAUCCCAUGCACUCUGACACUCACUCAUUCAGCGCCAAACUUCC---------------A .((..(((----((((.((..((((((((......))))))))......(((((......))))).....))))))))).))..................---------------. ( -19.10) >DroYak_CAF1 14544 97 + 1 CGAUUUGA----GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUCUUUUUAUGGCCAAUCCCAUGCACUCCGACACUCACUCACUCAGCUCGAAACUUCC---------------A (((.((((----((((((...((((((((......)))))))).......((((......))))))))...((.......)))))))).)))........---------------. ( -22.40) >DroPer_CAF1 15707 92 + 1 CGAUUUGAAAGUGUGUGCAUUCGAUUGAAAUUAAAUGCAAUUGUUUUUUUAUGGCCAAUUCCGUGCUCUCUGACCCUUCGUCA----------GACUUCAU--------------A .....((((((..((.(((((..((....))..)))))(((((..(......)..))))).))..)).((((((.....))))----------)).)))).--------------. ( -16.60) >consensus CGAUUUGA____GUGUGCAUUCAAUUGAAAUUAAAUUCAAUUGUUUUUUUAUGGCCAAUCCCAUGCACUCUGACACUCACUCAUUCAGCUCCAAACUCCAA______________A ............(.((((...((((((((......)))))))).......((((......)))))))).).............................................. (-12.96 = -13.02 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:58 2006