| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,852,218 – 7,852,320 |
| Length | 102 |
| Max. P | 0.639835 |
| Location | 7,852,218 – 7,852,320 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.54 |
| Mean single sequence MFE | -27.43 |
| Consensus MFE | -19.92 |
| Energy contribution | -20.87 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.639835 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7852218 102 + 27905053 ----------ACUUUGGUCGAAGCCACAAAGUAUGCAGCAGAGGAUCAAAAACAUUGCUUCAUCAAUUUCAGCUCA--GUUUGGCUCCAAACAAUGUGGCAAUGUUGCAAAGCA------ ----------.(((((..((..((((((..(.(((.(((((.(.........).))))).))))............--(((((....)))))..))))))..))...)))))..------ ( -24.80) >DroSec_CAF1 13178 102 + 1 ----------ACUUUUGUCGGAGCCACAAAGUAUGCAGCAGAGGAUCAAAAACAUUGCUUCGUCAAUUCCAGCUCA--GUUUGGCUGCAAACAAUGUGGCAAUGUUGCAAAGCA------ ----------..((((((((..((((((..((.((((((.((.((.(((.....)))..)).)).....(((....--..))))))))).))..))))))..))..))))))..------ ( -28.60) >DroSim_CAF1 13378 102 + 1 ----------ACUUUGGUCGGAGCCACAAAGUAUGCAGCAGAGGAUCAAAAACAUUGCUUCAUCAAUUUCAGCUCA--GUUUGGCUCCAAACAAUGUGGCAAUGUUGCAAAGCA------ ----------.(((((..((..((((((..(.(((.(((((.(.........).))))).))))............--(((((....)))))..))))))..))...)))))..------ ( -26.00) >DroEre_CAF1 13285 102 + 1 ----------ACUUUGGUCAGAGCCACAAAGUAUGCAGCAGGGGAUCAAGAACAUUGCUUCAUCAGUUUCAGCUCA--GUUUGGUUCCAAACAAUGUGGCAAUGUUUCAAAGCA------ ----------.((((((.((..((((((..(.(((.(((((.(.........).))))).))))............--(((((....)))))..))))))..))..))))))..------ ( -27.80) >DroYak_CAF1 13447 102 + 1 ----------ACUUUGGUCAGAGCCACAAAGUAUGCAGCAGGAGAUCUAGAACAUUGCUUCAUCAAUUUCAGCUCA--GUUUGGUUCCAAACAAUGUGGCAAUGUUUCAAAGCA------ ----------.((((((.((..((((((.....((.(((..(((((...(((......)))....))))).)))))--(((((....)))))..))))))..))..))))))..------ ( -27.40) >DroAna_CAF1 14218 120 + 1 UGGGCGACCAACAAUGAGAGACGCCGCAAAGUAUGCAGCAGAGCCUCAAAAACAUUGCUUCAUCAAUUUCACUUCAAAGAGAGGACCAAAACAAUGUGGCUGGUGUACUGGGCAGCGGUG (((....)))...........(((.((..(((((((.....((((......((((((.........((((........)))).........)))))))))).)))))))..)).)))... ( -29.97) >consensus __________ACUUUGGUCGGAGCCACAAAGUAUGCAGCAGAGGAUCAAAAACAUUGCUUCAUCAAUUUCAGCUCA__GUUUGGCUCCAAACAAUGUGGCAAUGUUGCAAAGCA______ ...........(((((..((..((((((..(.(((.(((((.(.........).))))).))))..............(((((....)))))..))))))..))...)))))........ (-19.92 = -20.87 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:57 2006