Locus 2926

Sequence ID 3R_DroMel_CAF1
Location 7,847,646 – 7,847,740
Length 94
Max. P 0.636478
window4710

overview

Window 0

Location 7,847,646 – 7,847,740
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 83.13
Mean single sequence MFE -19.72
Consensus MFE -13.99
Energy contribution -15.12
Covariance contribution 1.13
Combinations/Pair 1.15
Mean z-score -1.90
Structure conservation index 0.71
SVM decision value 0.21
SVM RNA-class probability 0.636478
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7847646 94 - 27905053
AAAAGGAAAAAAUACUUUCGCGACCACGGGAGCGUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG
..............((((((((.(....)...))))))))((((..((....)).........(((..((((....))))..)))..))))... ( -22.80)
>DroSec_CAF1 10840 94 - 1
AAAAGAAAAAAUUACUUUCGCGACCACGGGAGCGUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG
..............((((((((.(....)...))))))))((((..((....)).........(((..((((....))))..)))..))))... ( -22.80)
>DroSim_CAF1 10909 94 - 1
AAAAGAAAAAAAUACUUUCGCGACCACGGGAGCGUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG
..............((((((((.(....)...))))))))((((..((....)).........(((..((((....))))..)))..))))... ( -22.80)
>DroEre_CAF1 10813 87 - 1
-------AAAAAUACUUUCGCGGCCACAAGAGCGUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG
-------.......((((((((..(....)..))))))))((((..((....)).........(((..((((....))))..)))..))))... ( -21.10)
>DroYak_CAF1 11003 89 - 1
-----AAAAAAAUACUUUCGCGGCCACGGGAGCAUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG
-----.............(((((((...((..(......)..))...................(((..((((....))))..)))..))))))) ( -19.90)
>DroAna_CAF1 11790 71 - 1
--------AA---CUUUUCGCGGCU--GGGACCACGAAAGAGCUAAGAAAAUUCAAACAAAAAUGCAAC-AACUUUC---------AUUUUAUC
--------..---.(((((..((((--(....).(....)))))..)))))........((((((.((.-...)).)---------)))))... (  -8.90)
>consensus
_____AAAAAAAUACUUUCGCGACCACGGGAGCGUGAAAGAGCCAAGAAAAUUCAAACAAAAGUGCAACCAACUUUUUGGGGGCAAAGGUUGUG
..............((((((((..(....)..))))))))................((((...(((..((((....))))..)))....)))). (-13.99 = -15.12 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:56 2006