Locus 2921

Sequence ID 3R_DroMel_CAF1
Location 7,836,773 – 7,836,872
Length 99
Max. P 0.762342
window4702

overview

Window 2

Location 7,836,773 – 7,836,872
Length 99
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 86.49
Mean single sequence MFE -20.15
Consensus MFE -16.76
Energy contribution -16.23
Covariance contribution -0.53
Combinations/Pair 1.20
Mean z-score -2.03
Structure conservation index 0.83
SVM decision value 0.51
SVM RNA-class probability 0.762342
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7836773 99 - 27905053
AUUCCCUGAAACUC-----UCCAUCAAACUUACCAUCUUUUGCCUGUUUCGCCUUUUUAGCGAUGUUGAGCAGGCCUUUGUAUUUGCUGAUGAUUUCAUCUUUG
......(((((.((-----..((.((((..(((........(((((((((((.......)))).....)))))))....))))))).))..)))))))...... ( -18.10)
>DroSec_CAF1 33 99 - 1
AUUCCCUUAAGCUC-----UCCAUCAAACAUACCAUCUUUCGCCUGUUUCGCCUUUUUGGCGAUGUUGAGCAGGCCUUUAUAUUUGCUGAUGAUUUCAUCUUUG
....(((...((((-----..(((((((((..(........)..))))).(((.....)))))))..)))))))..............((((....)))).... ( -21.30)
>DroSim_CAF1 33 99 - 1
AUUCCCUUAAGCUC-----UCCAUCAAACUUACCAUCUUUCGCCUGUUUCGCCUUUUUGGCGAUGUUGAGCAGGCCUUUAUACUUGCUGAUGAUUUCAUCUUUG
..............-----......................((((((((((((.....))))).....))))))).............((((....)))).... ( -21.30)
>DroEre_CAF1 38 99 - 1
AUUCCCUGCAACGU-----UCCAUCUAACUUACCAUCUUUCGCCUGCUUGGCUUUUUUUGCAAUGUUGAGCAGGCCCUUGUAUUUGCUGAUGAUUUCAUCUUUG
.......((((.((-----(......)))............(((((((..((............))..)))))))........)))).((((....)))).... ( -23.90)
>DroYak_CAF1 33 99 - 1
AUUCCCUGAAGCUU-----UCCAUCUAACUUACCAUCUUUCGCCUGUUUGGCUUUCUUUGCAAUGUUGAGCAGGCCUUUAUAUUUGCUGAUGAUUUCAUCUUUG
..............-----......................(((((((..((............))..))))))).............((((....)))).... ( -19.10)
>DroAna_CAF1 33 104 - 1
AGUUCCAGAAACUUCUUCCUACCACCACCUUACCAUCUUUCGCCUGUUUUGCUUUUUUGGCAAUGUUUAACAGGCCCUUGUAUUUGUUGAUGAUUUCAUCUUUG
.....((((................................((((((((((((.....))))).....))))))).............((((....)))))))) ( -17.20)
>consensus
AUUCCCUGAAACUC_____UCCAUCAAACUUACCAUCUUUCGCCUGUUUCGCCUUUUUGGCAAUGUUGAGCAGGCCUUUAUAUUUGCUGAUGAUUUCAUCUUUG
.........................................(((((((..((.((......)).))..))))))).............((((....)))).... (-16.76 = -16.23 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:48 2006