Locus 292

Sequence ID 3R_DroMel_CAF1
Location 1,123,812 – 1,123,903
Length 91
Max. P 0.983444
window499

overview

Window 9

Location 1,123,812 – 1,123,903
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 93.80
Mean single sequence MFE -27.12
Consensus MFE -21.94
Energy contribution -22.58
Covariance contribution 0.64
Combinations/Pair 1.05
Mean z-score -2.41
Structure conservation index 0.81
SVM decision value 1.94
SVM RNA-class probability 0.983444
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1123812 91 + 27905053
AAGCUCGUGAAAAUGAAAAUCUCAAGCGGCGAUGAUGGCAAACGCUUCACUAUCGUCGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU
..(((((((.(((((..........(((((((((..(((....)))....)))))))))...........))))).))).))))....... ( -27.20)
>DroSec_CAF1 57460 90 + 1
AAGCGCGUGC-AAUGAAAAUCUCAAGCGGCGAUGAUGGCAAACGCUUCACUAUCGUCGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU
..((((((((-(((((.....))..(((((((((..(((....)))....)))))))))....)))))))...(((....)))..)))).. ( -32.10)
>DroSim_CAF1 58002 90 + 1
AAGCGCGUGC-AAUGAAAAUCUCAAGCGGCGAUGAUGGCAAACGCUUCACUAUCGUCGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU
..((((((((-(((((.....))..(((((((((..(((....)))....)))))))))....)))))))...(((....)))..)))).. ( -32.10)
>DroEre_CAF1 58174 89 + 1
-AGCUCGCGC-AACAAAAAACUCAAGCGGCGAUGAUGGCAAACGCUUCACUAUCGACGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU
-.....((((-..............(((.(((((..(((....)))....))))).)))......(((.((........)).))))))).. ( -24.30)
>DroYak_CAF1 78544 89 + 1
-AACUCGUGC-AACAAAAAACUCAAGCAGCGAUGAUGGCAAACGCUUCACUAUCGACGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU
-.....((((-..............((..(((((..(((....)))....)))))..))......(((.((........)).))))))).. ( -19.90)
>consensus
AAGCUCGUGC_AAUGAAAAUCUCAAGCGGCGAUGAUGGCAAACGCUUCACUAUCGUCGCACCAAUUGCACCAUUUCCACGGAGCAGCGCCU
......((((...............(((((((((..(((....)))....)))))))))......(((.((........)).))))))).. (-21.94 = -22.58 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:40 2006