| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,820,289 – 7,820,379 |
| Length | 90 |
| Max. P | 0.666372 |
| Location | 7,820,289 – 7,820,379 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 86.92 |
| Mean single sequence MFE | -22.87 |
| Consensus MFE | -18.27 |
| Energy contribution | -18.42 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7820289 90 - 27905053 GGGACCGGGAGAGCAGAUUUGGAAACAGAAAAUGGAUCACAUGAGUGUUUUAAAUAAUCACUGGGCUGGAGAUUAUUUCAAACACGGACA ....((....((.((..((((....))))...))..))......((((((.((((((((.((.....)).)))))))).))))))))... ( -22.20) >DroSec_CAF1 9342 88 - 1 GGGACCGGGAGAGCAGAUUUGGAAACAGA--UUGGAUCACAAGAGUGUUUCAAAUAAUCGCUGGGCUGGAGAUUAUUUCAAACACGGACA ....((....((...((((((....))))--))...))......((((((.((((((((.((.....)).)))))))).))))))))... ( -26.00) >DroSim_CAF1 11309 88 - 1 GAGACCGGGAGAGCAGAUUUGGAAACAGA--UUGGAUCACAAGAGUGUUUCAAAUAAUCGCUGGGCUGGAGAUUAUUUCAAACACGGACA ....((....((...((((((....))))--))...))......((((((.((((((((.((.....)).)))))))).))))))))... ( -26.00) >DroEre_CAF1 11313 88 - 1 GAGGCCGGAAGAGCAGAUUUGGCAACAGA--AUGGAUCACAAGAGUGUUUUAAAUAAUCACUGGGCUGGAGAUUAUUUCAAACACGGAUA ((.(((....).))...((((....))))--.....))......((((((.((((((((.((.....)).)))))))).))))))..... ( -22.10) >DroYak_CAF1 11666 88 - 1 GGGACCGGGAGAGCAGAUUUGGAAACAGA--AUGGAUCACAAGAGUGUUUCAAAUAAUCACUGGGCUGGAGAUUAUUUCAAACACGGACA ....((....((.((..((((....))))--.))..))......((((((.((((((((.((.....)).)))))))).))))))))... ( -22.30) >DroAna_CAF1 11038 88 - 1 CGGAUCGGAAGAGCAGAGACGGAUUCAUG--AAGGACUAAAAUAGUGUUUUAAAUAAUCACAGGGCUGGGGAUUAUUCAAAGCACGAAUA .(((((.(...........).)))))...--.............(((((((.(((((((.((....))..))))))).)))))))..... ( -18.60) >consensus GGGACCGGGAGAGCAGAUUUGGAAACAGA__AUGGAUCACAAGAGUGUUUCAAAUAAUCACUGGGCUGGAGAUUAUUUCAAACACGGACA ....((.......((..((((....))))...))..........((((((.((((((((.((.....)).)))))))).))))))))... (-18.27 = -18.42 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:43 2006