| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,813,757 – 7,813,855 |
| Length | 98 |
| Max. P | 0.851851 |
| Location | 7,813,757 – 7,813,855 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 75.46 |
| Mean single sequence MFE | -23.55 |
| Consensus MFE | -13.22 |
| Energy contribution | -12.99 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.851851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7813757 98 - 27905053 UUGC--ACUGUGCGAUGAACUCGUUACUGCGCGGGCAUAGUAAAAUGAAAGUCACAGAUGUGGCAAAUUGAUAAAUUAGCUGCAUUACAAAC---AUAU--G----UAU-- .(((--.((((((((((....))))...)))))))))...................((((..((.((((....)))).))..))))......---....--.----...-- ( -23.40) >DroSec_CAF1 3011 101 - 1 UUGC--ACUGUGCGAUGAACUCGUUACUGC--GGGCAUAGUAAAAUGAAAGUCACAUAUGUGGCAAAUUGAAAAAUUAGCUGCAUUACAAACUACAUAU--A----UAUAC ....--(((((((.......((((....))--)))))))))........(((.....(((..((.((((....)))).))..))).....)))......--.----..... ( -20.91) >DroEre_CAF1 4774 107 - 1 UUGU--AGUGUGCGAUGAACUCGUUGCUGC--GGGCAUAGUAAAAUGAAAGUCACAGAUGUGGCAAAUUGAAAAAUUAGCUGCAUUACAAACUACAUACUCGUAUGUAUAU ((((--(((((((((((....))))))...--.(((..............(((((....))))).((((....)))).))))))))))))..((((((....))))))... ( -30.40) >DroYak_CAF1 4816 105 - 1 UUGC--AGUGUGCGAUGAACUCGUUGCUGC--GGACAUAGUGAAAUGAAAGUCACAGAUGUGGCAAAUUGAAAAAUUAGCUGCAUUACAAACUACAUAU--AAAUGUAUAU ((((--((((.((((.....))))))))))--))((((.((((........)))).((((..((.((((....)))).))..)))).............--..)))).... ( -27.80) >DroAna_CAF1 4896 107 - 1 UCAC--UAUAUGCGAUGAACUCGUUGCUGU--AGUUAUAGCAAAAUGAAAGUCUGAGAUGUGGCAAAUUGAAAAAUUGGAUGCAUAAAAGCCCAUUUAUCCAGAUAUAUAC ..((--((((.((((((....)))))))))--)))...............((((((((((.(((.((((....))))(....)......))))))))...)))))...... ( -23.20) >DroPer_CAF1 3745 97 - 1 UCACUCGUUGUGCGAAAAA--UGUUGUU-----------GUAAAAUGAAAGUCAGAAAUGUGGUAAAUUGAAAAAUUAGCUGCAUGGAGAGAUAUAUACACAGAGAUAUA- ...(((..((((.......--..(..((-----------....))..)..(((....(((..((.((((....)))).))..))).....))).....))))))).....- ( -15.60) >consensus UUGC__ACUGUGCGAUGAACUCGUUGCUGC__GGGCAUAGUAAAAUGAAAGUCACAGAUGUGGCAAAUUGAAAAAUUAGCUGCAUUACAAACUACAUAU__A_AU_UAUA_ .............(((.......((((((........)))))).......)))....(((((((.((((....)))).))))))).......................... (-13.22 = -12.99 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:43 2006