Locus 2915

Sequence ID	3R_DroMel_CAF1
Location	7,809,103 – 7,809,212
Length	109
Max. P	0.602951

overview

Window 5

Location	7,809,103 – 7,809,212
Length	109
Sequences	4
Columns	116
Reading direction	reverse
Mean pairwise identity	87.35
Mean single sequence MFE	-38.03
Consensus MFE	-29.17
Energy contribution	-29.91
Covariance contribution	0.75
Combinations/Pair	1.12
Mean z-score	-1.51
Structure conservation index	0.77
SVM decision value	0.14
SVM RNA-class probability	0.602951
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7809103 109 - 27905053
GAAAAGUAAGUUGGCCAACAACUGGUUACGCCGA-------ACUGUGCAAGUCGGAUUUGGUGUUACCAAUCCUGCUAUUGCAUCACGGGCACGAACUUGGCCUCGGCCUGGCCAA
........(((((.....)))))(((((.(((((-------...((((((((.(((((.((.....))))))).)))..)))))...((.((......)).))))))).))))).. ( -37.70)
>DroSim_CAF1 160 116 - 1
GAAAAGUAAGUUGGCCAACAACUGGUUACGCCGAACAGGGAACUGUGCAAGUCUGAUUUGGUGUUACCAAUCCUGCUAUUGCAUCACGGGCACGAACUUGGCCUCGGCCUGGCCAA
..........((((((......((((.(((((((((((...(((.....)))))).)))))))).))))....(((....)))....((((.(((........))))))))))))) ( -38.20)
>DroEre_CAF1 160 104 - 1
GAAAAGUAAGUUGGCCAACAACUGGUUGCGCCGAACAGGGAACUGUGCAAGUCGGAUUUGGUG------------CAAUUGCAUCACGGGCACGAACUUGGCCUCGGCCUGGCCAA
..........(((((((.(((....))).(((((((((....)))).((((((((...(((((------------(....))))))....).)).)))))...))))).))))))) ( -37.70)
>DroYak_CAF1 154 108 - 1
GAAAAGUAAGUUGGCCAACAACUGGUUGCGCCGAUCGGGGAACUGGGCAAGUCGGAUUUGGUGCUAG--------CAAUUGCAUCACGGGCACGAACUUGGCCUCGGCCUGGCCAA
..........(((((((.(((....))).(((((..((....))((.((((((((...((((((...--------.....))))))....).)).))))).))))))).))))))) ( -38.50)
>consensus
GAAAAGUAAGUUGGCCAACAACUGGUUACGCCGAACAGGGAACUGUGCAAGUCGGAUUUGGUGUUAC________CAAUUGCAUCACGGGCACGAACUUGGCCUCGGCCUGGCCAA
........(((((.....)))))(((((.(((((((((....)))).(((((((....((((((................))))))......)).)))))...))))).))))).. (-29.17 = -29.91 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:42 2006