| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,805,845 – 7,805,935 |
| Length | 90 |
| Max. P | 0.587066 |
| Location | 7,805,845 – 7,805,935 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 82.32 |
| Mean single sequence MFE | -17.48 |
| Consensus MFE | -12.18 |
| Energy contribution | -11.80 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7805845 90 - 27905053 GUGCGCGAACUACGGGUAAGAGAAAUCUUAACAAAUUCAAUUACUCCCGUACACAGAAAGAAUAUUUUCUUUCUUUGGCAUUUAAUAAU-A----- ((((......(((((((((((....)))))...............))))))((.((((((((....)))))))).))))))........-.----- ( -23.96) >DroSec_CAF1 6905 83 - 1 GUGCGCGAACUACGGGUAAGAGAAAUCUUAACAAAUGCAAUUACUCUCGUACACAGAAAGAAAAUA------UUUCGGCAUUUAA--AAAA----- (((..(((.(....).(((((....)))))................)))..))).((((.......------)))).........--....----- ( -15.00) >DroSim_CAF1 6791 85 - 1 GUGCGCGAACUACGGGUAAGGGAAAUCUUAACAAAUGCAAUUACUCUCGUACACAGAAAGAAAAUA------CUUUGGCAUUUAAUAAAAA----- (((..(((.....((((((..(...............)..)))))))))..)))..((((......------))))...............----- ( -10.96) >DroEre_CAF1 7109 90 - 1 GUGCGCGAACUACGGGUAAGAGAAAUCUUCGCAAAUUCCACUACUCGCGUACACAGAAAGAAAACA------UUUUGGCCUUUAUUUGAAAAUCGA ((((((((.(....)((((((....)))).))............)))))))).(((((........------)))))................... ( -20.00) >consensus GUGCGCGAACUACGGGUAAGAGAAAUCUUAACAAAUGCAAUUACUCUCGUACACAGAAAGAAAAUA______CUUUGGCAUUUAAUAAAAA_____ (((((.((.(....)((((((....)))).))............)).)))))............................................ (-12.18 = -11.80 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:41 2006