Locus 2912

Sequence ID 3R_DroMel_CAF1
Location 7,794,384 – 7,794,484
Length 100
Max. P 0.758093
window4692

overview

Window 2

Location 7,794,384 – 7,794,484
Length 100
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 86.43
Mean single sequence MFE -21.66
Consensus MFE -16.39
Energy contribution -16.27
Covariance contribution -0.12
Combinations/Pair 1.13
Mean z-score -1.83
Structure conservation index 0.76
SVM decision value 0.49
SVM RNA-class probability 0.758093
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7794384 100 + 27905053
AUCUCCGUGGGGUCCGCCGAUCAUGUCAAUAAACUUUGGAUCCCACAUUCUCGGCUUAUCGCCAACCUAUAUUAAGUAUUC-GCCCAUAUGAUAUAAA-----CAC
......((((((((((....................))))))))))......(((.....)))....(((((((.((....-....)).)))))))..-----... ( -22.25)
>DroSec_CAF1 4809 100 + 1
AUCUCCGUGGGUUUCGCCGAUCAUGUCAAUAAACUUUGGGUCCCACAUUCUCGGCUUAUCGCCAACCUAUAUUAAGUAUUC-GCCCAUAUGAUACACA-----CAC
(((...((((((...(((((..(((((((......)))(....)))))..)))))...........((......)).....-))))))..))).....-----... ( -17.70)
>DroSim_CAF1 4871 100 + 1
AUCUCCGUGGGGUCCGCCGAUCAUGUCAAUAAACUUUGGAUCCCACAUUCUCGGCUUAUCGCCAACCUAUAUUAAGUAUCC-GCCCAUAUGAUACACA-----CAC
......((((((((((....................))))))))))......(((.....)))............(((((.-........)))))...-----... ( -23.65)
>DroEre_CAF1 4860 90 + 1
AUCUCCGUGGGGUCCGUCGAUCAUGUCAAUAAACUUUGGAUCCCACAUUCCCUGCUUAUCACCCACAUAUAUUAAGUAU---------AUGGUACAC-------AG
......((((((((((....................))))))))))...................(((((((...))))---------)))......-------.. ( -20.65)
>DroYak_CAF1 4955 106 + 1
AUCUCCGUGGGGUCCGCCGAUCAUGUCAAUAAACUUUGGAUCCCACAUUCGCUGCUUAUCGCCAACCUAUAUUAAGUAUUCCCCCCAUUUGGCACACAGCACUCAG
......((((((((((....................))))))))))....((((......(((((.......................)))))...))))...... ( -24.05)
>consensus
AUCUCCGUGGGGUCCGCCGAUCAUGUCAAUAAACUUUGGAUCCCACAUUCUCGGCUUAUCGCCAACCUAUAUUAAGUAUUC_GCCCAUAUGAUACACA_____CAC
......((((((((((....................)))))))))).......(((((..............)))))............................. (-16.39 = -16.27 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:39 2006