| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,792,969 – 7,793,089 |
| Length | 120 |
| Max. P | 0.804600 |
| Location | 7,792,969 – 7,793,089 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.55 |
| Mean single sequence MFE | -34.52 |
| Consensus MFE | -24.12 |
| Energy contribution | -24.15 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7792969 120 - 27905053 UAGCUUAAAUCGAGUGUAAAAUGAGUUCGGCUCGCUUCGCGCGCUCAGGGCGCGUCCGUAUCUGCAUCCUGAUGAGCAUGUUCAUCGUGCUCAUCAUGAUGAUUGUUAUCUACCAAAUGU ((((....((((..((((....(((.....)))((...((((((.....))))))..))...))))..)(((((((((((.....))))))))))).)))....))))............ ( -37.10) >DroVir_CAF1 3645 119 - 1 AAG-UUAUUACUUUUGGACAAUGAGUUCGGCACGUUUUGCUCGUUCGGGCCGCGUUCGAAUAUGCAUUCUGAUGAGCAUGUUUGUUGUGCUCAUCAUGAUGAUUGUCAUUUACCACAUGU ...-............((((((..((((((.((((...((((....)))).))))))))))...((((.(((((((((((.....))))))))))).))))))))))............. ( -38.50) >DroPse_CAF1 3421 117 - 1 CAA--CGAAUUGA-CUCACAAUGAGCUCGACUCGUUUUGCGCGCUCUGGGCGCGUUCGCAUCUGUAUUCUGAUGAGCAUGUUCGUGGUGCUCAUCAUGAUGAUUGUCAUUUACCAAAUGU .((--(((.((((-(((.....))).)))).)))))..((((((.....))))))..((((.((......(((((((((.......)))))))))(((((....)))))....)).)))) ( -37.70) >DroGri_CAF1 3458 120 - 1 AAGAAUAUUUAUAGAGAAAAAUGAGUACGGCUCGUUUUGCCCGUUCGGGGCGCGUUCGAAUCUGCAUACUGAUGAGCAUGUUUGUGGUGCUCCUUAUGAUGAUUGUCAUUUACCACAUGU .....(((((((........)))))))..(((((((..((((.....))))(((........))).....))))))).....(((((((......(((((....))))).)))))))... ( -29.90) >DroAna_CAF1 32299 114 - 1 ------AUUUCUAAUUCAAAAUGAGUUCAACUCGCUUUGCGCGCACUGGACGCGUGCGUCUCUGCAUUCUGAUGAGCAUGUUCCUGGUGCUCAUAAUGAUGAUUGUUAUUUACCAAAUGU ------..........((((.((((.....)))).)))).(.((((..(..((((((.((((........)).))))))))..)..)))).)..((((((....)))))).......... ( -26.20) >DroPer_CAF1 3427 117 - 1 CAA--CGAAUUGA-CUCACAAUGAGCUCGACUCGUUUUGCGCGCUCUGGGCGCGUUCGCAUCUGUAUUCUGAUGAGCAUGUUCGUGGUGCUCAUCAUGAUGAUUGUCAUUUACCAAAUGU .((--(((.((((-(((.....))).)))).)))))..((((((.....))))))..((((.((......(((((((((.......)))))))))(((((....)))))....)).)))) ( -37.70) >consensus AAG__UAAAUCGA_UGCAAAAUGAGUUCGACUCGUUUUGCGCGCUCUGGGCGCGUUCGAAUCUGCAUUCUGAUGAGCAUGUUCGUGGUGCUCAUCAUGAUGAUUGUCAUUUACCAAAUGU ............................(((.((....((((((.....)))))).))......((((.((((((((((.......)))))))))).))))...)))............. (-24.12 = -24.15 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:35 2006