| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,790,631 – 7,790,721 |
| Length | 90 |
| Max. P | 0.790006 |
| Location | 7,790,631 – 7,790,721 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 89.79 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -18.69 |
| Energy contribution | -18.92 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.790006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7790631 90 - 27905053 AUACUCUAUAUACUUGGUUUUCUGUGAUAAAAAUAA-ACGCUGCGCUGCAUUUGGGCAAUGUUGCCUGUUUUUUUUGUCGCUGCCUACACG ...............(((.....((((((((((.((-((((......))....(((((....))))))))))))))))))).)))...... ( -22.20) >DroSec_CAF1 1085 90 - 1 AUACUCUAUAUACUUGGUUUUCUGUGAUAAAAAUAACUCGCUGCACUGCAUUUGGGCAAUGUUGCCUGUUU-UUUUGUCGCUGCCACCACG ..............((((.....((((((((((.(((..((.(((.(((......))).))).))..))))-)))))))))....)))).. ( -23.50) >DroSim_CAF1 1083 90 - 1 AUACUCUAUACACUUGGUUUUCUGUGAUAAAAAUAACUCGCUGCACUGCAUUUGGGCAAUGUUGCCUGUUU-UUUUGUCGCUGCCACCACG ..............((((.....((((((((((.(((..((.(((.(((......))).))).))..))))-)))))))))....)))).. ( -23.50) >DroEre_CAF1 1092 89 - 1 AU-UUCUUUGUACUUGGUUUUCUGUGAUAAAAAUAACUCGCUGCACUGCAUUUGGGCAAUGUUGCCUGUUU-UUUUGUCGCUGCCUCCACG ..-...........(((......((((((((((.(((..((.(((.(((......))).))).))..))))-))))))))).....))).. ( -22.50) >DroYak_CAF1 1083 89 - 1 AU-GUCUUUGUACUUGGUUUUCUGUGAUAAGAAUAACUCGCUGCACUGCAUUUGGGCAUUGUUGCCUGUUU-UUUUGUCGCCGCCUCCACG ..-...........(((....(.((((((((((.(((..((.(((.(((......))).))).))..))))-))))))))).)...))).. ( -21.90) >DroAna_CAF1 29894 84 - 1 AU-UAUUUUGUACUUGGUUUUCUGUGAUAAAAAUAACUCGCUGCACUGCAUUUGGGCAAUGUUGCCUGUGU-UUUUGUCGCCGCAU----- ..-....................((((((((((((.(..((.(((.(((......))).))).))..))))-))))))))).....----- ( -20.00) >consensus AU_CUCUAUAUACUUGGUUUUCUGUGAUAAAAAUAACUCGCUGCACUGCAUUUGGGCAAUGUUGCCUGUUU_UUUUGUCGCUGCCUCCACG ...............(((.....(((((((((..(((..((.(((.(((......))).))).))..)))..))))))))).)))...... (-18.69 = -18.92 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:33 2006