Locus 2905

Sequence ID 3R_DroMel_CAF1
Location 7,784,234 – 7,784,341
Length 107
Max. P 0.981514
window4684

overview

Window 4

Location 7,784,234 – 7,784,341
Length 107
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 82.07
Mean single sequence MFE -25.30
Consensus MFE -17.50
Energy contribution -17.33
Covariance contribution -0.16
Combinations/Pair 1.11
Mean z-score -2.95
Structure conservation index 0.69
SVM decision value 1.89
SVM RNA-class probability 0.981514
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7784234 107 + 27905053
AGGAGCUUCGUCGACGGAGAGUCAAUUCUAUUCAAACAAGCAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAA----CAAU
.((..(((((....)))))..))................((...(....).....(((.(((....))).)))............))((((.....))))...----.... ( -24.70)
>DroSec_CAF1 6147 111 + 1
AGCCGCUUCGUUCCCAGAACGUCAAUUCAAUUCAAACAAGCAAAGUGAAAACAUCGCUAAGCGAAAGCUAAGCAAACUAACAAGCGCAGCUGAACAAGCUAAACAAACAAU
.((.(((((((((...))))).......................((....))...(((.(((....))).)))........))))))((((.....))))........... ( -24.30)
>DroEre_CAF1 6237 107 + 1
CGCUGCUUGUUUCUUUUAGCCUCACUUCAAUUCAAAGAAGCAAAGUGAACACAUCGCUGAGCGAACGCUAAGCAACCAAAUAAGCGCAGCUGAACAAGCUAAA----CAAA
.((.((((((((.........((((((...(((...)))...)))))).......(((.(((....))).)))....))))))))))((((.....))))...----.... ( -26.90)
>consensus
AGCAGCUUCGUUCACAGAGCGUCAAUUCAAUUCAAACAAGCAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAA____CAAU
....(((((.......)))....................((...((....))...(((.(((....))).)))..........))))((((.....))))........... (-17.50 = -17.33 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:31 2006