Locus 2903

Sequence ID 3R_DroMel_CAF1
Location 7,781,336 – 7,781,456
Length 120
Max. P 0.803674
window4681

overview

Window 1

Location 7,781,336 – 7,781,456
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -47.93
Consensus MFE -47.64
Energy contribution -47.32
Covariance contribution -0.31
Combinations/Pair 1.07
Mean z-score -1.83
Structure conservation index 0.99
SVM decision value 0.63
SVM RNA-class probability 0.803674
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7781336 120 - 27905053
CUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACCGCCGGAGACACACAC
.((.(((((((((((...))))))))))).))(((((((((.((..(((((((((((........)).))))))..)))..)).)))))))))(((.(((((......)))).).))).. ( -48.70)
>DroSec_CAF1 3816 120 - 1
CUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACAGCCGGAGACACACAC
.((.(((((((((((...))))))))))).))(((((((((.((..(((((((((((........)).))))))..)))..)).)))))))))(((.(((((......)))).).))).. ( -48.70)
>DroSim_CAF1 3824 120 - 1
CUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACAGCCGGAGACACACAC
.((.(((((((((((...))))))))))).))(((((((((.((..(((((((((((........)).))))))..)))..)).)))))))))(((.(((((......)))).).))).. ( -48.70)
>DroEre_CAF1 4042 120 - 1
CUCAAGGGUGAGCGCAAUGUGCUCAUCUUCGACUUGGGUGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAAGUGCGCUCCACCGCCGGAGACACGCAC
.((.(((((((((((...))))))))))).)).(((((..(.((..(((((((((((........)).))))))..)))..)).)..))))).(((((((((......))))...))))) ( -45.60)
>consensus
CUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACAGCCGGAGACACACAC
.((.(((((((((((...))))))))))).))((((..(((.((..(((((((((((........)).))))))..)))..)).)))..))))(((.(((((......)))).).))).. (-47.64 = -47.32 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:28 2006