Locus 2902

Sequence ID 3R_DroMel_CAF1
Location 7,780,376 – 7,780,496
Length 120
Max. P 0.666625
window4680

overview

Window 0

Location 7,780,376 – 7,780,496
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.69
Mean single sequence MFE -45.42
Consensus MFE -41.74
Energy contribution -42.55
Covariance contribution 0.81
Combinations/Pair 1.05
Mean z-score -1.60
Structure conservation index 0.92
SVM decision value 0.28
SVM RNA-class probability 0.666625
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7780376 120 + 27905053
GAAGACGUAGCUCUCCAGGGCAUUUCUAGAGGUUAUUCGCUGGCGAUGCUUCUCGUCCUCGUCGGCGUACUUUUCAGCCUCGUUCACCAUGCGAUCAAUCUCGGCCUGCGAGAGCCGUCC
...((((..((((((((((((((.....((((((...(((((((((.((.....))..)))))))))........)))))).......))))((......))..)))).)))))))))). ( -44.30)
>DroSec_CAF1 2856 120 + 1
GAAGACGUAGCUUUCCAGGGCAUUUCGAGAGGUUAUGCGCUGGCGCUGCUUCUCGUCCUCGUCGGCGUACUUCUCAGCCUCGUUCACCAUGCGAUCAAUCUCGGCCUGCGAGAGGCGUCC
...(((((..(((((((((.(.....(((((((...(((((((((..((.....))...))))))))))))))))....((((.......))))........).)))).)))))))))). ( -45.60)
>DroSim_CAF1 2864 120 + 1
GAAGACGUAGCUUUCCAGGGCAUUCCGAGAGGUAAUGCGCUGGCGCUGCUUCUCGUCCUCGUCGGCGUACUUCUCAGCCUCGUUCACCAUGCGAUCAAUCUCGGCCUGCGAGAGGCGUCC
...(((..(((...((((.(((((((....)).))))).)))).)))(((((((((....((((((..........)))((((.......))))........)))..)))))))))))). ( -47.00)
>DroEre_CAF1 3082 120 + 1
GAAGACGUAGCUCUCCAGGGCAUUUCGAGAGGUAAUCCGCUGGCGCUGCUUCUCGUCCUCGUCGGCAUACUUCUCAGCCUCGUUCACCAUGCGAUCAAUCUCGGCCUGCGAGAGGCGUCC
...(((((..(((((((((.(.....((((((((....(((((((..((.....))...))))))).))))))))....((((.......))))........).)))).)))))))))). ( -44.80)
>consensus
GAAGACGUAGCUCUCCAGGGCAUUUCGAGAGGUAAUGCGCUGGCGCUGCUUCUCGUCCUCGUCGGCGUACUUCUCAGCCUCGUUCACCAUGCGAUCAAUCUCGGCCUGCGAGAGGCGUCC
...(((((..(((((((((.(.....(((((((...(((((((((..((.....))...))))))))))))))))....((((.......))))........).)))).)))))))))). (-41.74 = -42.55 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:27 2006