| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,779,410 – 7,779,524 |
| Length | 114 |
| Max. P | 0.986754 |
| Location | 7,779,410 – 7,779,524 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.88 |
| Mean single sequence MFE | -44.00 |
| Consensus MFE | -27.42 |
| Energy contribution | -27.40 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.34 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.62 |
| SVM decision value | 2.05 |
| SVM RNA-class probability | 0.986754 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7779410 114 - 27905053 UGCUGCUGCCGUGAUCAUGGCUACGGUUGCUGCCAUGAUCAUGGCUACGGCUGCUGCUCUGCCGCGAGGAGCGGUGGUAAC---UGCUGCUACCGCCAGCAUCUUCGCCUGAAUGGC .((((..((((((((((((((..........))))))))))))))..)))).(((..((....((((((((((((((((.(---....).))))))).)).)))))))..))..))) ( -60.20) >DroSec_CAF1 1982 90 - 1 UGCUGCUGCCGUGAUCAUGGCUACG------------------------GCUGCUGCUCUGCCGCGAGGAGCGGUGGUAAC---UGCUGCUGCCGCCAGCAUCUUCGCCUGAAUGGC .((((..(((((....)))))..))------------------------)).(((..((....((((((((((((((((.(---....).))))))).)).)))))))..))..))) ( -40.30) >DroSim_CAF1 1969 90 - 1 UGCUGCUGCCGUGAUCAUGGCUACG------------------------GCUGCUGCUCUGCCGCGAGGAGCGGUGGUAAC---UGCUGCUGCCGCCAGCAUCCUCGCCUGAAUGGC .((((..(((((....)))))..))------------------------)).(((..((....((((((((((((((((.(---....).))))))).)).)))))))..))..))) ( -43.00) >DroEre_CAF1 2164 93 - 1 UGCUCCUGCCAUGAUCGUGGCUACG------------------------GCUGCUGCUAUGCCGCGUGGAGCGGUGGUGGUGGUAACUGCUGCUGCCAGCGUCUUCGCCUGAAUGGC .......(((((....(((((...(------------------------((....)))..)))))((((((((.(((..(..((....))..)..))).)).))))))....))))) ( -42.50) >DroYak_CAF1 2081 90 - 1 UGCUGCUGCCAUGCUCGUGGCUACG------------------------GCUGCUGCUCUGCCGCGAGGAGCGGUGGUAGC---UGCUGCUGCCGCCAGCAUCUUCGCCUGAAUGGC .((((..(((((....)))))..))------------------------)).(((..((....((((((((((((((((((---....))))))))).)).)))))))..))..))) ( -47.60) >DroAna_CAF1 4831 93 - 1 UGCUGUUGCUG---CCGUGGUCGU------------------GACUCCGGCUGCUACUGUGCCUCGAAGACCGGUGCUGGC---UACUGCUUCCUCUAUCGUCUUCAGCAGAUCGGC .((((..((.(---(((..((...------------------.))..)))).))..((((.....((((((.((((..(((---....))).....)))))))))).))))..)))) ( -30.40) >consensus UGCUGCUGCCGUGAUCAUGGCUACG________________________GCUGCUGCUCUGCCGCGAGGAGCGGUGGUAAC___UGCUGCUGCCGCCAGCAUCUUCGCCUGAAUGGC .......(((((..(((.(((............................((.((......)).))((((((((((((((........))))))))).....)))))))))))))))) (-27.42 = -27.40 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:26 2006