Locus 290

Sequence ID 3R_DroMel_CAF1
Location 1,118,793 – 1,118,897
Length 104
Max. P 0.529428
window493

overview

Window 3

Location 1,118,793 – 1,118,897
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.64
Mean single sequence MFE -36.30
Consensus MFE -25.04
Energy contribution -26.52
Covariance contribution 1.47
Combinations/Pair 1.14
Mean z-score -1.04
Structure conservation index 0.69
SVM decision value -0.01
SVM RNA-class probability 0.529428
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1118793 104 + 27905053
CGGAAUGGCCUUGCCGAUGGGCUUGCCCAUGCGCAGGCGUAGAUACAAUGGUGGGUCAAGGCAGGCUCGAGCCGGUCGUGGGAUGAGUUCUGU--------G---GAAGAU---AC--AA
(((..((((((.(((....((((..((..((((....))))........))..))))..))))))).))..))).(((..(((....)))..)--------)---).....---..--.. ( -35.40)
>DroPse_CAF1 58944 117 + 1
CGGUAUGGCCUUGCCAAUGGGCUUGCCCAUGCGCAGGCGCAAAUACAAAGGUGGGUCAAGACAGGCUCUUGCCGGACGUGGGAUGAGCUCUAAAUGAAAGUGCGAGAAUAU---ACCAAA
.((((((..(((((....(((((((((((((((....))).........((((((((......)))))..)))....))))).)))))))...((....)))))))..)))---)))... ( -42.20)
>DroWil_CAF1 55543 98 + 1
CGGUAUAGCCUUGCCAAUGGGUUUACCCAUACGCAGGCGCAAAUAUAAUGGUGGGUCAAGACAGGCUCGUGCUGGACGUGGUAUUAGUUCUG-----------------AA---AU--UG
((((((.(((((((..(((((....)))))..))))).))............(((((......)))))))))))..................-----------------..---..--.. ( -27.30)
>DroMoj_CAF1 47476 114 + 1
CGGUAUUGCCUUGCCAAUGGGCUUGCCCAUGCGCAGGCGGAAAUACAAAGGUGGGUCAGAACAGGCGCGUGCUGGACGCGGUAUAAGCUCUGCAAGCG--AAUGGGAAUAU---AUC-AA
..(((((((((.((((.((((....)))))).))))))...)))))...((((..((....((..(((.(((.(((.((.......)))))))).)))--..)).))...)---)))-.. ( -36.90)
>DroAna_CAF1 50164 107 + 1
CGGAAUGGCCUUGCCAAUGGGCUUGCCCAUGCGCAGGCGCAGAUACAAUGGUGGGUCAAGGCAGGCGCGUGCCGGACGUGGUAUGAGUUCUGC--------G---UAAAAUUAUAA--AU
.....((((((.(((((((((....)))))(((....)))........))))))))))..((((((.(((((((....))))))).).)))))--------.---...........--.. ( -38.60)
>DroPer_CAF1 58320 117 + 1
CGGUAUGGCCUUGCCAAUGGGCUUGCCCAUGCGCAGGCGCAAAUACAAAGGUGGGUCAAGACAGGCUCUUGCCGGACGUGGGAUGAGCUCUAAAUGAAAGUGAGAGAAUAU---ACCAAA
.((((((..((..(((..(((((((((((((((....))).........((((((((......)))))..)))....))))).)))))))....))...)..))....)))---)))... ( -37.40)
>consensus
CGGUAUGGCCUUGCCAAUGGGCUUGCCCAUGCGCAGGCGCAAAUACAAAGGUGGGUCAAGACAGGCUCGUGCCGGACGUGGGAUGAGCUCUGA________G___GAAUAU___AC__AA
.....((((((.(((.(((((....)))))(((....))).........)))))))))...(((((((((.(((....))).)))))).)))............................ (-25.04 = -26.52 +   1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:35 2006