Locus 2896

Sequence ID 3R_DroMel_CAF1
Location 7,774,312 – 7,774,408
Length 96
Max. P 0.794785
window4670

overview

Window 0

Location 7,774,312 – 7,774,408
Length 96
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 79.02
Mean single sequence MFE -18.79
Consensus MFE -11.01
Energy contribution -11.95
Covariance contribution 0.95
Combinations/Pair 1.12
Mean z-score -1.94
Structure conservation index 0.59
SVM decision value 0.60
SVM RNA-class probability 0.794785
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7774312 96 - 27905053
GCCAAGCAACAAUUUAAUUGCUAUUCAAUUUUAAAAGCAGUUCAAUUGCAAACCAUUA--CAAAUAUGUAAUUUGCUGUCGAUUGCUUUUGCACUGGA-----
.((((((((........))))).........(((((((((((.(...((((...((((--((....))))))))))..).)))))))))))...))).----- ( -22.40)
>DroGri_CAF1 82202 96 - 1
GUGAAGCAACAAUUUAAUUGCAU-------ACUAAAACAGUUCAAUUACACACAAUUACACAAAUACGUAAUUUGCUUUGAAUUGCAUUUGCUAUUGGCUAUU
....(((((((((((((..(((.-------.........((......))....((((((........))))))))).))))))))...))))).......... ( -14.40)
>DroEre_CAF1 72140 96 - 1
GCAAAGCAACAAUUUAAUUGCUAUUCAAUUUUAAAAGCAGUUCAAUUGCAAACCAUUA--CAAAUAUGUAAUUUGCUUUCGAUUGCAUUUGCAUUGGA-----
((((((((((((((.(((((((.............))))))).))))((((...((((--((....))))))))))....).)))).)))))......----- ( -21.12)
>DroYak_CAF1 72444 96 - 1
GCGAAGCAACAAUUUAAUUGCUAUUCAAUUUUAAAAGCAGUUCAAUUGCAAACCAUUA--CAAAUAUGUAAUUUGCUGUCGAUUGCAUUUGAAUUGGA-----
..(((((((........)))))..))...........((((((((.(((((.(.((..--(((((.....)))))..)).).))))).))))))))..----- ( -20.90)
>DroMoj_CAF1 77689 89 - 1
GUGCAGCAACAAUUUAAUUGUGA-------ACUAAAACAGUUCAAUUACAAGCAAUUA--CAAAUAUUUAAUUUACUUUCAAUUGCAUUUGCGCCUGG-----
((((((..............(((-------(((.....)))))).......((((((.--....................))))))..))))))....----- ( -14.60)
>DroAna_CAF1 86338 94 - 1
GCGAAGCAACAAUUUAAUUGCUAUUGAGUUUAAAAAGCAGUUCAAUUGCAAACAAUAA--CAAAUAUGUAAUUUGCC-CCGAUUGCAUUUGCAUUGG------
((((((((((((((.(((((((.((.......)).))))))).)))))..........--(((((.....)))))..-....)))).))))).....------ ( -19.30)
>consensus
GCGAAGCAACAAUUUAAUUGCUAUUCAAUUUUAAAAGCAGUUCAAUUGCAAACAAUUA__CAAAUAUGUAAUUUGCUUUCGAUUGCAUUUGCAUUGGA_____
((((((((((((((.(((((((.............))))))).)))))............(((((.....))))).......)))).)))))........... (-11.01 = -11.95 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:17 2006