Locus 2894

Sequence ID 3R_DroMel_CAF1
Location 7,770,885 – 7,770,982
Length 97
Max. P 0.891827
window4668

overview

Window 8

Location 7,770,885 – 7,770,982
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 90.93
Mean single sequence MFE -24.93
Consensus MFE -21.67
Energy contribution -22.03
Covariance contribution 0.37
Combinations/Pair 1.26
Mean z-score -1.91
Structure conservation index 0.87
SVM decision value 0.97
SVM RNA-class probability 0.891827
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7770885 97 + 27905053
UUUUUCGGGGGCAAUCCCAGACGGUCCGGUCGAAAACCUCAACGCCCCAAAAGAACCAACUAAAAGUGAGCCCAGGAAAACUUUAAGCUCACUUUAU
(((((..(((((.......(((......)))((.....))...)))))..))))).......(((((((((..(((....)))...))))))))).. ( -27.60)
>DroSec_CAF1 68059 97 + 1
UUUUUCGGGGGCAAUCCCAGACGGUCCGGUCGAAAACCUCACCGCCCCAAAAGAACCAACUAAAAGUGAGUCCCGGAAAACUUUAAGCUCACUUUAU
(((((..(((((....((....))...(((.((.....))))))))))..))))).......(((((((((...((....))....))))))))).. ( -26.20)
>DroSim_CAF1 71316 97 + 1
UUUUUCGGGGGCAAUCCCAGACGGUCCGGUCGAAAACCUCAACGCCCCAAAAGAACCAACUAAAAGUGAGCCCAGGAAAACUUUAAGCUCACUUUAU
(((((..(((((.......(((......)))((.....))...)))))..))))).......(((((((((..(((....)))...))))))))).. ( -27.60)
>DroEre_CAF1 68544 97 + 1
UUUUUCGGCGGCAAUCCCAGACGGUCCGGUCGAAAACCUCAACGCUCCAAAAGAACCAACUAAAAGUGAGCCCAGGAAAACUUUAAGCUCACUUUAU
.((((((((((....((.....)).)).))))))))..........................(((((((((..(((....)))...))))))))).. ( -21.40)
>DroYak_CAF1 68770 97 + 1
UUUUUCGGCGGCAAUCCCAGACGGUCCGGUCGAAAACCUCAACGCCGCAAAGGAACCAACUAAAAGUGAGCCCAGGAAAACUUUAAGCUCACUUUAU
..((((.(((((.......(((......)))((.....))...)))))...)))).......(((((((((..(((....)))...))))))))).. ( -27.10)
>DroAna_CAF1 82947 88 + 1
UUUUUCGG-GGCAGUCCCAGACGG-----UCGAAAACCUCAACGC-GUAGAAGAACCCACUGAAAGUUGGC-CUGGAAAACUUUAAGCUCGCUU-AG
.(((((.(-(((.(((...)))((-----(.....))).((((..-.(((.........)))...))))))-)).)))))...((((....)))-). ( -19.70)
>consensus
UUUUUCGGGGGCAAUCCCAGACGGUCCGGUCGAAAACCUCAACGCCCCAAAAGAACCAACUAAAAGUGAGCCCAGGAAAACUUUAAGCUCACUUUAU
(((((..(((((.......(((......)))((.....))...)))))..))))).......(((((((((..(((....)))...))))))))).. (-21.67 = -22.03 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:15 2006