Locus 2893

Sequence ID 3R_DroMel_CAF1
Location 7,769,463 – 7,769,554
Length 91
Max. P 0.706596
window4667

overview

Window 7

Location 7,769,463 – 7,769,554
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 82.44
Mean single sequence MFE -17.85
Consensus MFE -11.37
Energy contribution -11.73
Covariance contribution 0.36
Combinations/Pair 1.10
Mean z-score -2.28
Structure conservation index 0.64
SVM decision value 0.36
SVM RNA-class probability 0.706596
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7769463 91 - 27905053
----AAACGAUGCA-AAGUUCGCGG-----CUC-AAACAAUUUUCAUUAGCAACAACAAAAACCGCUAAUUUCACUUACAAUUAGCGGUAAGCCAACAUGUC
----...(((....-....))).((-----((.-...............(......)....((((((((((........)))))))))).))))........ ( -17.50)
>DroVir_CAF1 84142 84 - 1
----AAA--UUGCAAAAGUUCGCUGUCGUUCUAAAACCACUUUUCAUUAGUAACA------ACCGCUAAUUUCACU------UAGUGGUAUGCCAACAUGUC
----...--........(((.((....(((((((............)))).))).------((((((((......)------)))))))..)).)))..... ( -14.60)
>DroPse_CAF1 124543 94 - 1
GAGCAAAUAGCACC-AAGUUCUUGG-----CUU-AAACAAUUUUCAUGAGCAACAA-AAGAACCGCUAAUUUCACUUACAAUUAGCGGUAUGCCAACAUGUC
(.(((.........-....((((.(-----(((-(...........))))).....-))))((((((((((........)))))))))).))))........ ( -20.20)
>DroSec_CAF1 66637 91 - 1
----AAACGAUGCA-AAGUUCGCGG-----CUC-AAACAAUUUUCAUUAGCAACAACAAAAACCGCUAAUUUCACUUACAAUUAGCGGUAAGCCAACAUGUC
----...(((....-....))).((-----((.-...............(......)....((((((((((........)))))))))).))))........ ( -17.50)
>DroSim_CAF1 69892 91 - 1
----AAACGAUGCA-AAGUUCGCGG-----CUC-AAACAAUUUUCAUUAGCAACAACAAAAACCGCUAAUUUCACUUACAAUUAGCGGUAAGCCAACAUGUC
----...(((....-....))).((-----((.-...............(......)....((((((((((........)))))))))).))))........ ( -17.50)
>DroAna_CAF1 80439 90 - 1
----AAAUGACGCA-AAGUUCUCGG-----CUU-GAACAAUUUUCAUUAGCAACAACAA-AACCGCUAAUUUCACUUACAAUUAGCGGUGUGCCCACAUGUC
----..(((..(((-..(((....(-----(((-(((.....))))..)))...)))..-.((((((((((........)))))))))).)))...)))... ( -19.80)
>consensus
____AAACGAUGCA_AAGUUCGCGG_____CUC_AAACAAUUUUCAUUAGCAACAACAAAAACCGCUAAUUUCACUUACAAUUAGCGGUAAGCCAACAUGUC
.............................................................((((((((((........))))))))))............. (-11.37 = -11.73 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:14 2006