| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,755,676 – 7,755,787 |
| Length | 111 |
| Max. P | 0.771639 |
| Location | 7,755,676 – 7,755,787 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.01 |
| Mean single sequence MFE | -37.07 |
| Consensus MFE | -30.15 |
| Energy contribution | -31.07 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7755676 111 + 27905053 CGGGGAAAUUGUAACUCAAAGCUAGCGUGGGUGAGCGCAAUGGAUGGUGGCAAGAGGUCGCUAGGAUCCACAGGAUUCGCGCUGGA--UUCACAUAACGCAAGACAGUUGGCG .(((..........)))...((((((((((((.(((((......(((((((.....)))))))((((((...)))))))))))..)--)))))....(....)...)))))). ( -39.40) >DroSec_CAF1 52822 111 + 1 CGGGGAAAUUGUAACUCAAAGCUAGCGUGGGUGAGCGCAAUGGAUGGCGGCAAGAGGUCGCUAGGAUCCACAGGAUUCGCGCUGGA--UUCACAUAACGCAAGACAGUUGGCG .(((..........)))...((((((((((((.(((((......(((((((.....)))))))((((((...)))))))))))..)--)))))....(....)...)))))). ( -41.30) >DroSim_CAF1 55985 109 + 1 CGGGGAAAU-GU-ACUCAAAGCUAGCGUGGGUGAGCGCAAUGGAUGGCGGCAAGAGGUCGCUAGGAUCCACAGGAUUCGCGCUGGA--UUCACAUAACGCAAGACAGUUGGCG .(((.....-..-.)))...((((((((((((.(((((......(((((((.....)))))))((((((...)))))))))))..)--)))))....(....)...)))))). ( -42.20) >DroEre_CAF1 53033 111 + 1 CGGGGAAAUUGUAACUCAAAGCUAACGUGGGUGAGCGCAAUGGAUGGCGGCAAGAGGUCGCUAGGAUCCACAGGAUUCGCGCUGGA--UUCACAAAACGCAAGACAGUUGGCG .(((..........)))...((((((((((((.(((((......(((((((.....)))))))((((((...)))))))))))..)--)))))....(....)...)))))). ( -41.30) >DroYak_CAF1 53443 111 + 1 CGAGGAAAUUGUAACUCAAAGCUAACGUGGGGGAGCGAAAUGGACGGCGGCAAGAGGUCGCAAGGAUUCACAGGAUUCGCGCUGGA--UUCACAAAACGCAAGACAGUUGGCG .(((..........)))...(((((((((((..((((.........(((((.....)))))..(((((.....))))).))))...--)))))....(....)...)))))). ( -33.20) >DroAna_CAF1 66222 90 + 1 CAGCAAAACCGUAACUCAAAGCCAACAA-GGUGAGCGCGG----------------------AGGAUUCACGGGAUUCGCGCCGGAUAUCCACAUAACGCAAGACAGUUGGCG ....................((((((..-.(((.((((((----------------------(............))))))).((....)).)))..(....)...)))))). ( -25.00) >consensus CGGGGAAAUUGUAACUCAAAGCUAACGUGGGUGAGCGCAAUGGAUGGCGGCAAGAGGUCGCUAGGAUCCACAGGAUUCGCGCUGGA__UUCACAUAACGCAAGACAGUUGGCG .(((..........)))...(((((((((((..(((((......(((((((.....)))))))((((((...))))))))))).....)))))....(....)...)))))). (-30.15 = -31.07 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:10 2006