Locus 2889

Sequence ID 3R_DroMel_CAF1
Location 7,751,500 – 7,751,607
Length 107
Max. P 0.977807
window4662

overview

Window 2

Location 7,751,500 – 7,751,607
Length 107
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 81.46
Mean single sequence MFE -25.90
Consensus MFE -22.02
Energy contribution -23.02
Covariance contribution 1.00
Combinations/Pair 1.09
Mean z-score -2.25
Structure conservation index 0.85
SVM decision value 1.80
SVM RNA-class probability 0.977807
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7751500 107 + 27905053
CUACUGGCAUUCACACAUGUCCCUGUCCCUGUCCCUGUCCCUGUCCUUGUCCCUGUAUCUAUCCCUGUCCCUGUCCUCCGGCAGGAUAUUCGACUUUCCAUGGGCGG
.....(((((......))))).............((((((.((.....(((...((((.....((((((..........))))))))))..)))....)).)))))) ( -20.10)
>DroSec_CAF1 48682 89 + 1
CUCCUGGCAUUCACACAUGUCCCUGUCCCUG------------------UCCCUGUAUCUGUCCCUUUCCCUGUCCUCCGGCAGGAUAUUCGACUUUCCAGGGGCAG
.....(((((......))))).......(((------------------((((((.....(((......((((((....))))))......)))....))))))))) ( -28.50)
>DroSim_CAF1 50529 95 + 1
CUCCUGGCAUUCACACAUGUCCCUGUCCCUG------------UCCUUGUCCCUGUAUCUGUCCCUUUCCCUGUCCUCCGGCAGGAUAUUCGACUUUCCAGGGGCAG
.....(((((......))))).(((((((((------------.....(((...((((...........((((((....))))))))))..)))....))))))))) ( -27.20)
>DroEre_CAF1 48864 84 + 1
CUCCUGGCAUUCACACAUGUCC-----------------------CCUGUCCCUGUCCCUGUCCCCAUCCCUGUCCUCCGGCAGGAUAUUCGACUUUCCAGGGGCGG
.....(((((......))))).-----------------------.(((((((((.....(((......((((((....))))))......)))....))))))))) ( -27.80)
>consensus
CUCCUGGCAUUCACACAUGUCCCUGUCCCUG______________CUUGUCCCUGUAUCUGUCCCUUUCCCUGUCCUCCGGCAGGAUAUUCGACUUUCCAGGGGCAG
.....(((((......))))).........................(((((((((.....(((......((((((....))))))......)))....))))))))) (-22.02 = -23.02 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:09 2006