| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,746,165 – 7,746,293 |
| Length | 128 |
| Max. P | 0.856233 |
| Location | 7,746,165 – 7,746,255 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 95.56 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -22.90 |
| Energy contribution | -23.57 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.91 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7746165 90 - 27905053 AUUUCUCUUAUUUAAGGUGCGAGCGCAUCAGCAAUGCCACAAUUCCGGUUCUUUUCCUUCGGCUUCAACAGCUCGUUGUUGUGGUGGCUG ...............(((((....)))))(((...((((((((..(((((......(....).......))).))..)))))))).))). ( -25.12) >DroSec_CAF1 43397 90 - 1 AUUUCUCUUAUUUAAGGUGCGAGCGCAUCAGCCAUGCCACCAUUCCGGUUCUUUUCCUUCGGCUUCAACAGCUCGUUGUUGUGGUGGCUG ...............(((((....)))))......(((((((..((((..........))))...((((((....))))))))))))).. ( -26.80) >DroEre_CAF1 43425 90 - 1 AUUUCUCUUAUUUAAGGUGCGAGCGCAUCAGCAAUGCCACCAUUCCGGUUCCUCUCCUUCGGCUUCAACAGCUCGUUCUUGUGGUGGCUC ...............(((((....)))))......((((((((...((.......))..(((((.....))).)).....)))))))).. ( -23.90) >consensus AUUUCUCUUAUUUAAGGUGCGAGCGCAUCAGCAAUGCCACCAUUCCGGUUCUUUUCCUUCGGCUUCAACAGCUCGUUGUUGUGGUGGCUG ...............(((((....)))))......(((((((..((((..........))))...((((((....))))))))))))).. (-22.90 = -23.57 + 0.67)
| Location | 7,746,175 – 7,746,293 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 94.92 |
| Mean single sequence MFE | -31.00 |
| Consensus MFE | -27.56 |
| Energy contribution | -27.84 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7746175 118 + 27905053 AACAACGAGCUGUUGAAGCCGAAGGAAAAGAACCGGAAUUGUGGCAUUGCUGAUGCGCUCGCACCUUAAAUAAGAGAAAUGGCAGCCAUAAAAUGCCAGCAGCAAUGGCAAGUGGAAC .....((.(((.....)))))...........(((......((.((((((((.(((....)))................(((((.........))))).)))))))).))..)))... ( -29.60) >DroSec_CAF1 43407 118 + 1 AACAACGAGCUGUUGAAGCCGAAGGAAAAGAACCGGAAUGGUGGCAUGGCUGAUGCGCUCGCACCUUAAAUAAGAGAAAUGGCAGCCAUAAAAUGCCAGCAGCAAUGGCAAGUGGAAC ....((..(((((((...(((............)))..((.(((((((((((.....(((.............)))......)))))).....))))).)).)))))))..))..... ( -32.12) >DroSim_CAF1 45305 118 + 1 AACAACGAGCUGUUGAAGCCGAAGGAAAAGAACCGGAAUGGUGGCAUGGCUGAUGCGCUCGCACUUUAAAUAAGAGAAAUGGCAGCCAUAAAAUGCCAGCAGCAAUGGCAAGNNNNNN ........(((((((...(((............)))..((.(((((((((((.(((....)))((((.....))))......)))))).....))))).)).)))))))......... ( -32.00) >DroEre_CAF1 43435 118 + 1 AAGAACGAGCUGUUGAAGCCGAAGGAGAGGAACCGGAAUGGUGGCAUUGCUGAUGCGCUCGCACCUUAAAUAAGAGAAAUGGCAGCCAUAAAAUGCCAGCAGCAAUGGCAAGUGGAAC ....((..(((((((...(((............)))..((.(((((((....(((.(((.((..(((......))).....))))))))..))))))).)).)))))))..))..... ( -30.70) >DroYak_CAF1 43821 118 + 1 AACAACGAGCUGUUGAAGUCGAAGGAGGAGAACCGGAAUGGUGGCAUUGCUGAUGCGCUCGCACCUUAAAUAAGAGAAAUGGCAGCCAUAAAAUGCCAGCAGCAAUGGCAAGUGGAAC ....((..(((((((...((....))((....))....((.(((((((....(((.(((.((..(((......))).....))))))))..))))))).)).)))))))..))..... ( -30.60) >consensus AACAACGAGCUGUUGAAGCCGAAGGAAAAGAACCGGAAUGGUGGCAUUGCUGAUGCGCUCGCACCUUAAAUAAGAGAAAUGGCAGCCAUAAAAUGCCAGCAGCAAUGGCAAGUGGAAC ........(((((((...(((............)))..((.(((((((....(((.(((.((..(((......))).....))))))))..))))))).)).)))))))......... (-27.56 = -27.84 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:08 2006