| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,739,157 – 7,739,269 |
| Length | 112 |
| Max. P | 0.992024 |
| Location | 7,739,157 – 7,739,269 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.63 |
| Mean single sequence MFE | -29.29 |
| Consensus MFE | -19.88 |
| Energy contribution | -19.75 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -3.02 |
| Structure conservation index | 0.68 |
| SVM decision value | 2.30 |
| SVM RNA-class probability | 0.992024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7739157 112 + 27905053 CAGCAGCCAGCAGCUAACAGCCAACAGCAGACGAAUCCUUC---UCUUC-GAGGGUCUCAUCCUCGGUCCAGAAUUCAAGUUGCCUCCAACCAAUCUCGGCUGCUUCCA----ACUCUCU .(((((((.((((((....((.....))....((((...((---(..((-((((((...))))))))...))))))).))))))..............)))))))....----....... ( -29.76) >DroSec_CAF1 36284 112 + 1 CAGCAGCC-------AACAGCCAGCAGCAGACGAAUCCUUCUCCUCUAC-GAGGGUCUCAUCCUGCGUCCAGAAUUCAAGUUGCCUCCAACCAAUCUCGGCUGCUUCCAACCAACUCUCU .(((((((-------........((((..((.((..(((((........-)))))..)).)))))).............((((....)))).......)))))))............... ( -28.60) >DroEre_CAF1 36114 99 + 1 CAGCAGCC--------------AACAGCAGACGAAUCCUCC---UCUUUCGAGAGUCUCGUCCUGCGUCCAGGAUUCAAGUUGCCGCCAACCAAUCUCGGCUGCUUCCA----ACUCUCU .(((((((--------------....((((((((..((((.---......))).)..)))).)))).....(((((...((((....)))).))))).)))))))....----....... ( -30.10) >DroYak_CAF1 36586 98 + 1 CAGCAGCC--------------AACAGCAGACGAGUUCUCC---UCUUU-GAGAGUCUCAUCCUGCGUCCAGGAUUCAAGUUGCCUCUAACCAAUCUCGGCUGCUUCCA----ACUCUCU .(((((((--------------....((((..((((((((.---.....-))))).)))...)))).....(((((...((((....)))).))))).)))))))....----....... ( -28.70) >consensus CAGCAGCC______________AACAGCAGACGAAUCCUCC___UCUUC_GAGAGUCUCAUCCUGCGUCCAGAAUUCAAGUUGCCUCCAACCAAUCUCGGCUGCUUCCA____ACUCUCU .(((((((..................((((..((((((((..........)))))).))...)))).............((((....)))).......)))))))............... (-19.88 = -19.75 + -0.12)
| Location | 7,739,157 – 7,739,269 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.63 |
| Mean single sequence MFE | -37.60 |
| Consensus MFE | -28.44 |
| Energy contribution | -28.37 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.928297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7739157 112 - 27905053 AGAGAGU----UGGAAGCAGCCGAGAUUGGUUGGAGGCAACUUGAAUUCUGGACCGAGGAUGAGACCCUC-GAAGA---GAAGGAUUCGUCUGCUGUUGGCUGUUAGCUGCUGGCUGCUG .......----....((((((((((..((((..(.((((...((((((((....(((((.......))))-)....---..))))))))..)))).)..))))....))..)))))))). ( -38.20) >DroSec_CAF1 36284 112 - 1 AGAGAGUUGGUUGGAAGCAGCCGAGAUUGGUUGGAGGCAACUUGAAUUCUGGACGCAGGAUGAGACCCUC-GUAGAGGAGAAGGAUUCGUCUGCUGCUGGCUGUU-------GGCUGCUG ...............(((((((((.(..((((.(((....))).))))(..(..((((.(((((.(((((-......)))..)).)))))))))..)..).).))-------))))))). ( -37.60) >DroEre_CAF1 36114 99 - 1 AGAGAGU----UGGAAGCAGCCGAGAUUGGUUGGCGGCAACUUGAAUCCUGGACGCAGGACGAGACUCUCGAAAGA---GGAGGAUUCGUCUGCUGUU--------------GGCUGCUG .......----....((((((((((((((((((....)))))..))))......((((.(((((.(((((....))---.)))..)))))))))..))--------------))))))). ( -38.50) >DroYak_CAF1 36586 98 - 1 AGAGAGU----UGGAAGCAGCCGAGAUUGGUUAGAGGCAACUUGAAUCCUGGACGCAGGAUGAGACUCUC-AAAGA---GGAGAACUCGUCUGCUGUU--------------GGCUGCUG .......----....(((((((((.(..((((.(((....))).))))......((((.(((((..((((-.....---.)))).)))))))))).))--------------))))))). ( -36.10) >consensus AGAGAGU____UGGAAGCAGCCGAGAUUGGUUGGAGGCAACUUGAAUCCUGGACGCAGGAUGAGACCCUC_AAAGA___GAAGGAUUCGUCUGCUGUU______________GGCUGCUG ...............(((((((......((((.(((....))).))))...(((...(((((((..((((..........)))).)))))))...)))..............))))))). (-28.44 = -28.37 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:04 2006