Locus 2884

Sequence ID 3R_DroMel_CAF1
Location 7,732,103 – 7,732,194
Length 91
Max. P 0.605765
window4654

overview

Window 4

Location 7,732,103 – 7,732,194
Length 91
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 82.80
Mean single sequence MFE -23.37
Consensus MFE -13.87
Energy contribution -15.87
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.41
Structure conservation index 0.59
SVM decision value 0.15
SVM RNA-class probability 0.605765
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7732103 91 - 27905053
GCCCACUCAAGAAGUGGAGCACCAACCCCCACCUCGGCCAUCCGGCGAACGCCAUCAGGCUUAUGAAUAAAUUAAAAGGGAA--AACCCCACC
(((((((.....))))).))...............((((....(((....)))....))))................(((..--...)))... ( -22.80)
>DroSec_CAF1 29129 91 - 1
GCCCACUCAAGAAGUGGAGCACCAGCCCACACCUCGGCCAUCCGGCCAACGCCAUCAGGCUUAUGAAUAAAUUAAGAGGGAA--AACCCCACC
(((((((.....))))).))...........((((((((....))))...(((....)))...............))))...--......... ( -27.80)
>DroSim_CAF1 29108 91 - 1
GCCCACUCAAGAAGUGGAGCACCAACCCACACCUCGGCCAUCCGGCCAACGCCAUCAGGCUUAUGAAUAAAUUAAGAGGGAA--AACCCCACC
(((((((.....))))).))...........((((((((....))))...(((....)))...............))))...--......... ( -27.80)
>DroEre_CAF1 29048 90 - 1
GCCCACUCAAGAAGUAGAGCACCA-CCCCCUCCUCGGCCAUCCGGCGAACGCCAUCAGGCUUAUGAAUAAAUUAAGAGGGAA--AACCCCACC
(((.(((.....))).).))....-..(((((....(((....)))....(((....)))...............)))))..--......... ( -19.70)
>DroWil_CAF1 85757 74 - 1
CCCCACUCAAGAAGUGGGCUAUGU-----------------CAGGC--GUGCCACCAGGCUUAUGAAUAAAUUAAGAAAAAAGCAAGCCAACC
.((((((.....))))))......-----------------..(((--.(((.......((((.........))))......))).))).... ( -18.12)
>DroYak_CAF1 29365 90 - 1
GCCCACUGAAGAAGUAGAGCAGCA-CCCCCUCCUCGGCCAUCCGGCCAACGCCAUCAGGCUUAUGAAUAAAUUAAGAGGGUA--AACCCCACC
(((.(((.....))).).))....-..(((((...((((....))))...(((....)))...............)))))..--......... ( -24.00)
>consensus
GCCCACUCAAGAAGUGGAGCACCA_CCCCCACCUCGGCCAUCCGGCCAACGCCAUCAGGCUUAUGAAUAAAUUAAGAGGGAA__AACCCCACC
(((((((.....))))).))...........((((.(((....)))....(((....)))...............)))).............. (-13.87 = -15.87 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:01 2006