Locus 2883

Sequence ID 3R_DroMel_CAF1
Location 7,720,261 – 7,720,357
Length 96
Max. P 0.590048
window4653

overview

Window 3

Location 7,720,261 – 7,720,357
Length 96
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 84.91
Mean single sequence MFE -35.17
Consensus MFE -29.70
Energy contribution -29.40
Covariance contribution -0.30
Combinations/Pair 1.29
Mean z-score -1.55
Structure conservation index 0.84
SVM decision value 0.11
SVM RNA-class probability 0.590048
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7720261 96 + 27905053
UAAGACGAUUUUGAUUAUUGCGCGGCUGAAUGGUGGCAUACGUGUUGUCCACCGUCUGGCCCACAUGAUGAACCUGCUCAAGAGAGCUACGA---UGGU
.....((...((.(((((.(.(.((((..(((((((((.......)).)))))))..))))).)))))).))...((((....))))..)).---.... ( -28.80)
>DroVir_CAF1 29416 93 + 1
UCAGGCGAUUCUGAUUGUUGCGUGGUUGUAUGGUGGCAUACGUAUUGUCCACCGACUGGCC---AUGAUGCACCUGCUCCAGCGAGCUGCGG---UGAU
(((((....)))))......(((((((((.((((((((.......)).)))))))).))))---)))...((((.((((....))))...))---)).. ( -31.90)
>DroPse_CAF1 65253 99 + 1
UGAGACGAUUCUGGUUGUUGCGCGGCUGGAUGGUGGCAUAGGUAUUGUCCACCGUCUGGCCCACAUGGUGGACCUGCUCCAGCGAGCUGCGAUGAUGAU
.............((..(((((((((..((((((((((.......)).))))))))..)))....((.((((.....)))).)).)).))))..))... ( -40.30)
>DroGri_CAF1 29521 93 + 1
UCAAACGAUUCUGAUUAUUACGCGGCUGAAUGGUGGCGUACGUAUUGUCCACCGUUUGGCC---AUGAUGCACCUGCUCCAGCGAGCUGCGG---UGAU
.......................(((..((((((((((.......)).))))))))..)))---......((((.((((....))))...))---)).. ( -33.10)
>DroMoj_CAF1 23034 93 + 1
UCAGGCGAUUCUGAUUGUUGCGUGGCUGGAUGGUGGCAUACGUGUUGUCCACCGACUGGCC---AUGAUGCACCUGUUCCAGGGAACUGCGA---UGAU
(((.(((.(((....(((..((((((..(.((((((((.......)).)))))).)..)))---)))..)))((((...))))))).)))..---))). ( -36.60)
>DroPer_CAF1 64993 99 + 1
UGAGACGAUUCUGGUUGUUGCGCGGCUGGAUGGUGGCAUAGGUAUUGUCCACCGUCUGGCCCACAUGGUGGACCUGCUCCAGCGAGCUGCGAUGAUGAU
.............((..(((((((((..((((((((((.......)).))))))))..)))....((.((((.....)))).)).)).))))..))... ( -40.30)
>consensus
UCAGACGAUUCUGAUUGUUGCGCGGCUGGAUGGUGGCAUACGUAUUGUCCACCGUCUGGCC___AUGAUGCACCUGCUCCAGCGAGCUGCGA___UGAU
...((((((....)))))).((((((((((((((((((.......)).)))))))))))))..............((((....)))).)))........ (-29.70 = -29.40 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:47:00 2006