Locus 2882

Sequence ID 3R_DroMel_CAF1
Location 7,719,229 – 7,719,319
Length 90
Max. P 0.976313
window4652

overview

Window 2

Location 7,719,229 – 7,719,319
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 93.78
Mean single sequence MFE -16.37
Consensus MFE -15.67
Energy contribution -15.62
Covariance contribution -0.05
Combinations/Pair 1.20
Mean z-score -1.39
Structure conservation index 0.96
SVM decision value 1.77
SVM RNA-class probability 0.976313
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7719229 90 - 27905053
AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUACAUAU
......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. ( -16.70)
>DroSec_CAF1 16213 90 - 1
AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUACAUAU
......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. ( -16.70)
>DroSim_CAF1 16232 90 - 1
AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUACAUAU
......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. ( -16.70)
>DroEre_CAF1 16245 90 - 1
AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUACAUAA
......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. ( -16.70)
>DroYak_CAF1 16280 90 - 1
AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUAAAUAC
......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. ( -16.70)
>DroAna_CAF1 30906 89 - 1
AGUUACCAUUGACCGCUGUCCAGGUCCUCACGGACAGAGCCAGAAACUCAUUUGUGUUUGCAUUUACAUCAAAUAUAUU-AUAUGAAUAA
........(((....((((((..(....)..))))))...)))....((((.((((((((.((....))))))))))..-..)))).... ( -14.70)
>consensus
AGUUACUUUUGACCGCUGUCCGACUCCUCACGGGCAGAGCCAGAAACUCAUUUAUGUUUGCAUUUACAUUAAACAUAUACACAUACAUAU
......(((((....(((((((........)))))))...))))).......((((((((.........))))))))............. (-15.67 = -15.62 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:59 2006