Locus 2881

Sequence ID 3R_DroMel_CAF1
Location 7,717,723 – 7,717,817
Length 94
Max. P 0.734598
window4651

overview

Window 1

Location 7,717,723 – 7,717,817
Length 94
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 77.61
Mean single sequence MFE -25.50
Consensus MFE -16.21
Energy contribution -17.22
Covariance contribution 1.01
Combinations/Pair 1.26
Mean z-score -1.49
Structure conservation index 0.64
SVM decision value 0.43
SVM RNA-class probability 0.734598
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7717723 94 - 27905053
UCUGGAACA---------------GAUUCCUCAUCUUCCUGCAGCAGCUGGUUGCGCAUUGCUUCCAACUCUUCUUCGGAAGGAAGAGUGCCCUUUAGCUCCUCCAUUU
...(((..(---------------(((.....)))))))((.((.((((((..(.(((((.(((((.....(((....))))))))))))))..)))))).)).))... ( -25.80)
>DroPse_CAF1 61864 109 - 1
UCUGGGACAGCAGCUACCUCGUCAUCAUCAUCAUCUUCGUGAGGCAAUUUAUUACGCAUUGCCCGCAACUCCUCCUCUGAGGGCAGAGUGUCCUUUAGAUCUUCCAUUU
(((((((((.(.((........................(((.((((((.........)))))))))....((((....)))))).)..))))))..))).......... ( -24.50)
>DroSec_CAF1 14695 94 - 1
UCUGGAACA---------------UAUUCCUCAUCUUCCUGUAGCAGCUGGUUGCGCAUUUCUUCCAACUCUUCUUCGGAAGGUAGAGUGCCCUUUAGCUCCUCCAUUU
...((((..---------------..)))).........((.((.((((((..(.(((((.((....((.((((....))))))))))))))..)))))).)).))... ( -22.00)
>DroEre_CAF1 14748 94 - 1
UCUGGAACA---------------UCUUCCUCAUCUUCCUGGGGCAGCUGGUUGCGCAUUGCUUGCAACUCUUCUUCGGAAGGUAGAGUGUCCUUAAGCUCCUCCAUUU
...((((..---------------..)))).........(((((.(((((((((((.......)))))))((((....))))..............)))).)))))... ( -26.20)
>DroYak_CAF1 14778 94 - 1
UCUGGAACA---------------AUUUCCCCAUCUUCCUGGGGCAGCUGGUUGCGCAUUGCUUGCAACUCUUCUUCGGAAGGCAGAGUGCCCUUUAGCUCCUCCAUUU
..((((...---------------....(((((......))))).((((((..((((.((((........((((....)))))))).))))...))))))..))))... ( -30.10)
>DroPer_CAF1 61666 109 - 1
UCUGGGACAGCAGCUCCCUCGUCAUCAUCAUCAUCUUCGUGAGGCAAUUUAUUACGCAUGGCCCGCAACUCCUCCUCUGAGGGCAGAGUGUCCUUUAGAUCUUCCAUUU
(((((((((....((((((((((.((((.(......).)))))))..........((.......))............))))).))..))))))..))).......... ( -24.40)
>consensus
UCUGGAACA_______________UCUUCCUCAUCUUCCUGAGGCAGCUGGUUGCGCAUUGCUUGCAACUCUUCUUCGGAAGGCAGAGUGCCCUUUAGCUCCUCCAUUU
..((((...........................((((((.((((.((..(((((((.......))))))))).))))))))))..((((........)))).))))... (-16.21 = -17.22 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:58 2006