Locus 2880

Sequence ID 3R_DroMel_CAF1
Location 7,713,657 – 7,713,748
Length 91
Max. P 0.924077
window4650

overview

Window 0

Location 7,713,657 – 7,713,748
Length 91
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 94.67
Mean single sequence MFE -22.54
Consensus MFE -21.16
Energy contribution -20.36
Covariance contribution -0.80
Combinations/Pair 1.14
Mean z-score -1.36
Structure conservation index 0.94
SVM decision value 1.16
SVM RNA-class probability 0.924077
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7713657 91 - 27905053
UAAAACCCAAUACAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGCGGACUAACAUUUAACUA-AGGGAAGU
.....(((.(((((....))))).(((((((((....))))))))).((((((((..........))).))))).........-.))).... ( -21.80)
>DroSec_CAF1 10632 92 - 1
UGAAACCCAAUAUAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGCGGACUAACAUUUAACUAAAGGGAAGU
.....(((................(((((((((....))))))))).((((((((..........))).)))))...........))).... ( -20.00)
>DroSim_CAF1 10639 92 - 1
UGAAACCCAAUACAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGCGGACUAACAUUUAACUAAAGGGAAGU
.....(((.(((((....))))).(((((((((....))))))))).((((((((..........))).)))))...........))).... ( -21.80)
>DroEre_CAF1 10671 92 - 1
UGAAACCCAAUACAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGCUGGCUAACAUUUGACUAAAGGGAAGU
.....(((.(((((....))))).(((((((((....))))))))).(((((((....((.....)))))))))...........))).... ( -23.50)
>DroYak_CAF1 10710 92 - 1
UGAAACCCAAUACAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGUUAGCUAGCAUUUGAUUAUAGGGAAGU
.....(((.(((((....))))).(((((((((....))))))))).(((((((((.........)))))))))...........))).... ( -25.60)
>consensus
UGAAACCCAAUACAUGCGUGUGUGUUCAAUACAAAUCUGUGUUGAAGGUUAGCUGAAGGGUGUUGCGGACUAACAUUUAACUAAAGGGAAGU
.....(((.(((((....))))).(((((((((....)))))))))((((((.((...(((.......)))..)).))))))...))).... (-21.16 = -20.36 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:57 2006