Locus 2877

Sequence ID 3R_DroMel_CAF1
Location 7,702,871 – 7,702,966
Length 95
Max. P 0.764699
window4645

overview

Window 5

Location 7,702,871 – 7,702,966
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -44.50
Consensus MFE -44.50
Energy contribution -44.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 1.00
SVM decision value 0.51
SVM RNA-class probability 0.764699
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7702871 95 + 27905053
UCCGAUCCGAUCGGAUCGGCGAUUUGGUCGCCGGCUCUCGAUGCUCGAUGGGUUAAAAGGCCCGCUCCGGCCGGCGGGUCGAGUCAGUCUGCCCC
.(((((((....))))))).((((((..((((((((.(((.....))).(((((....))))).....))))))).)..)))))).......... ( -44.50)
>DroSec_CAF1 52560 95 + 1
UCCGAUCCGAUCGGAUCGGCGAUUUGGUCGCCGGCUCUCGAUGCUCGAUGGGUUAAAAGGCCCGCUCCGGCCGGCGGGUCGAGUCAGUCUGCCCC
.(((((((....))))))).((((((..((((((((.(((.....))).(((((....))))).....))))))).)..)))))).......... ( -44.50)
>DroSim_CAF1 52747 95 + 1
UCCGAUCCGAUCGGAUCGGCGAUUUGGUCGCCGGCUCUCGAUGCUCGAUGGGUUAAAAGGCCCGCUCCGGCCGGCGGGUCGAGUCAGUCUGCCCC
.(((((((....))))))).((((((..((((((((.(((.....))).(((((....))))).....))))))).)..)))))).......... ( -44.50)
>consensus
UCCGAUCCGAUCGGAUCGGCGAUUUGGUCGCCGGCUCUCGAUGCUCGAUGGGUUAAAAGGCCCGCUCCGGCCGGCGGGUCGAGUCAGUCUGCCCC
.(((((((....))))))).((((((..((((((((.(((.....))).(((((....))))).....))))))).)..)))))).......... (-44.50 = -44.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:52 2006