| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,700,472 – 7,700,575 |
| Length | 103 |
| Max. P | 0.530652 |
| Location | 7,700,472 – 7,700,575 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 81.32 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -13.07 |
| Energy contribution | -13.02 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7700472 103 - 27905053 A------UAUCCUCGAUUCGCUGUAGUUUUUGUAUCGCUGACCACAACAGAAUUUCACUCUUUACUGUAUUUUUUUUCU----CCACU-UGAGGACCCUCCACGCUGUUCCACC--- .------..((((((((((..(((.(((...(.....).))).)))...)))))..((........))...........----.....-.)))))...................--- ( -11.70) >DroSec_CAF1 50173 99 - 1 A--------UCCUCGAUUCGCUGUGGUUUUCGUAUCGCUGACCACAACAGAAUUUCACUCUUUACUGUAUUU--UUUCC----CCGCU-CGAGUACCCUUCAUGCUGCUCCAAC--- .--------..(((((...(((((((((..((...))..)))))))((((..............))))....--.....----..)))-)))).....................--- ( -17.14) >DroSim_CAF1 50341 99 - 1 A--------UCCUCGAUUCGCUGUGGUUUUCGUAUCGCUGACCACAACAGAAUUUCACUCUUUACUGUAUUU--UUUCU----CCACU-CGAGGACCCUCCAUGCUGCUCCAAC--- .--------(((((((.....(((((((..((...))..)))))))((((..............))))....--.....----....)-))))))...................--- ( -21.24) >DroEre_CAF1 50744 99 - 1 A--------UCCUCGAUUCGCUGUGGUUUUCGUAUCGCUGACCACAACAGAAUUUCACUCUUUACUGUAUUU--UUUCC----CCACC-AAGGGACCCUCCAUGCUGCUCCACC--- .--------.....(((((..(((((((..((...))..)))))))...)))))............((((..--..(((----(....-..))))......)))).........--- ( -18.00) >DroYak_CAF1 51926 102 - 1 A--------UCCUCGAUUCGCUGUGGUUUUUGUAUCGCUGACCACAACAGAAUUUCACUCUUUACUGUAUUU--UUUUU-CCACCACC-AGAGGACCCUCCAUGCUGCUCCACC--- .--------((((((((((..(((((((...(.....).)))))))...)))))..((........))....--.....-........-.)))))...................--- ( -18.40) >DroAna_CAF1 52224 115 - 1 AGUCCAAAGUCCCCGAUUCGUUGCGGUUUUUGUAUCGCUGACCAUGACAGAAUUUCUUUGUCCUAUAUAUUU--UUUUCUUUGCCACUCUGAGGGUCAUCCUGGCUACUCCACCCUC ((..(((((.....((((((((..((((...(.....).))))..))).))))).)))))..))........--................((((((......((.....)))))))) ( -20.30) >consensus A________UCCUCGAUUCGCUGUGGUUUUCGUAUCGCUGACCACAACAGAAUUUCACUCUUUACUGUAUUU__UUUCC____CCACU_AGAGGACCCUCCAUGCUGCUCCACC___ .........((((((((((..(((((((..((...))..)))))))...)))))..((........))......................)))))...................... (-13.07 = -13.02 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:48 2006