Locus 2873

Sequence ID 3R_DroMel_CAF1
Location 7,699,065 – 7,699,185
Length 120
Max. P 0.591285
window4638

overview

Window 8

Location 7,699,065 – 7,699,185
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.25
Mean single sequence MFE -26.43
Consensus MFE -22.00
Energy contribution -21.40
Covariance contribution -0.60
Combinations/Pair 1.17
Mean z-score -1.33
Structure conservation index 0.83
SVM decision value 0.12
SVM RNA-class probability 0.591285
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7699065 120 - 27905053
GUUGCGCAAACAUGUGUGCAGCCACAAAAAUAAUUAAUUGGCUCGAAUUCAAUACUGGGAAUGUACAUUUCCAAUAUUUGGACAGUGUGAAAGCAAUACGUUUUGUUACAAACAUUUUAA
(((..(((((.(((((((((((((..............)))))....((((.((((((.......)...((((.....))))))))))))).)).)))))))))))....)))....... ( -24.64)
>DroSec_CAF1 48922 120 - 1
GUUGCGCAAACAUGUGUGCAGCCACAAAAAUAAUUAAUUGGCGCAAAUUCAAUACUGGAAAUUUACAUUUUCAAUAUUUGGACAGUGUGAAAGCAAUACGGUUUGUUACAAACGUUUUAA
(((..((((((.(((((((.((((..............))))(((..(((((((.(((((((....))))))).)).)))))...)))....)).)))))))))))....)))....... ( -24.94)
>DroSim_CAF1 48969 120 - 1
GUUGCGCAAACAUGUGUGCAGCCACAAAAAUAAUUAAUUGGCGCGAAUUCAAUACUGGAAAUGUACAUUUUCAAUAUUUGGGCAGUGUGAAAGCAAUAUGGUUUGUUACAAACGUUUUAA
((((((((......))))))))....(((((......((.((((...(..((((.(((((((....))))))).))))..)...)))).))(((((......)))))......))))).. ( -24.90)
>DroEre_CAF1 49380 120 - 1
AUUGCGCAAACAUGUGUGCAGCCGCAAAAAUAAUUAAUUGGCGCGAAUUCAAUACUGGAAAUGUAAAUUUUCCAUAUUUGGACAGUGUGAAAGCAAUACGGUGUGUAACAAACGUUUUAA
.(((((((....(((((((.((((..............)))).....((((.(((((.((((....))))((((....))))))))))))).)).))))).)))))))............ ( -26.94)
>DroYak_CAF1 50558 120 - 1
GUUGCGCAAACAUGUGUGCAGCCACAAAAAUAAUUAAUUGGCGCGAAUUCAAUAUUGGAAAUAUACAUUUUCAAUAUUUGGACAGUGUGAAAGCAAUACGGUUUGUAGCUAACGUUUUGA
(((((((((((.(((((((.((((..............))))(((..(((((((((((((((....)))))))))).)))))...)))....)).))))))))))).)).)))....... ( -30.74)
>consensus
GUUGCGCAAACAUGUGUGCAGCCACAAAAAUAAUUAAUUGGCGCGAAUUCAAUACUGGAAAUGUACAUUUUCAAUAUUUGGACAGUGUGAAAGCAAUACGGUUUGUUACAAACGUUUUAA
(((((....((((.(((.((((((..............))))........((((.(((((((....))))))).)))))).)))))))....)))))....................... (-22.00 = -21.40 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:45 2006