| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,697,762 – 7,697,857 |
| Length | 95 |
| Max. P | 0.730068 |
| Location | 7,697,762 – 7,697,857 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.40 |
| Mean single sequence MFE | -28.13 |
| Consensus MFE | -17.83 |
| Energy contribution | -18.42 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7697762 95 - 27905053 UC---------CCCC--------------CCCUUGGCCAAAUCCAC--ACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGAUGAUGAUGGCAUUUUGUGGGCAG ..---------....--------------(((...((.((((((((--((((..((((((((((.(((((......)))))..)).))))).))).))).)).))).)))).)))))... ( -26.90) >DroSec_CAF1 47658 93 - 1 -----------CCCC--------------CCCUUGGCCAAAUCCAC--ACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGAUGAUGAUGGCAUUUUGUGGGCAG -----------....--------------(((...((.((((((((--((((..((((((((((.(((((......)))))..)).))))).))).))).)).))).)))).)))))... ( -26.90) >DroSim_CAF1 47675 104 - 1 ACCCCCUGCUUUCCC--------------CCCUUGGCCAAAUCCAC--ACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGAUGAUGAUGGCAUUUUGUGGGCAG .....((((.....(--------------(....))......((((--(...........((((((.(((......)))))).)))(((((((.......)))))))....))))))))) ( -29.20) >DroEre_CAF1 48065 114 - 1 UUCCCCUCCUCCCCUCCUCCACCACCUUUCCCCUGG-CAAAUCCAC--ACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGA---UGAUGGCAUUUUGUGGCCAG ................................((((-(.....(((--(...........((((((.(((......)))))).)))((((((.....---.))))))....))))))))) ( -28.40) >DroYak_CAF1 49206 112 - 1 UUCCCCUUUCCCCCUUC-------CUUUGCCCCUGG-CAAAUCCACACACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGAUGAUGAUGGCAUUUUGUGGGCAC .................-------...(((((...(-((((.(((((..(((..((((((((((.(((((......)))))..)).))))).))).))).)).)))...)))))))))). ( -31.40) >DroAna_CAF1 49783 88 - 1 GG-----------GA--------------CUCUUCCGGAAAUCCAG--GCAUAAAUCAUGUCACAGACUGCACUGACAGCUGCGGCGCCAUCGAUGAUGAUUAUGCUAUUUC-UG----G ..-----------..--------------.....((((((((...(--((((((.....(((.(((.(((......)))))).)))..((((...)))).))))))))))))-))----) ( -26.00) >consensus UC_________CCCC______________CCCUUGGCCAAAUCCAC__ACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGAUGAUGAUGGCAUUUUGUGGGCAG ..........................................((((..............((((((.(((......)))))).)))(((((((.......))))))).....)))).... (-17.83 = -18.42 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:44 2006