Locus 287

Sequence ID 3R_DroMel_CAF1
Location 1,108,922 – 1,109,015
Length 93
Max. P 0.523776
window488

overview

Window 8

Location 1,108,922 – 1,109,015
Length 93
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 79.96
Mean single sequence MFE -16.43
Consensus MFE -9.47
Energy contribution -10.32
Covariance contribution 0.85
Combinations/Pair 1.17
Mean z-score -1.68
Structure conservation index 0.58
SVM decision value -0.02
SVM RNA-class probability 0.523776
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1108922 93 - 27905053
GAAAAAACAU-CUGCGGAGAGCACGUUGAAAAGUAAACAAAUUUGAAUGUUCUAACUAGGAACAAAGUGUUUACGUGUAACG-----AAGAAAGGCCAA
.........(-((((.....)).(((((....(((((((........((((((.....))))))...)))))))...)))))-----.)))........ ( -18.40)
>DroSec_CAF1 42500 93 - 1
GAAAAAACAU-CUGCGGAGAACACGUUGAAAAGUAAACAAAUUUGAAUGUUCUAAAUAGGAACAAAGUGUUUACGUGUAACG-----AAGAAAGGCCAA
..........-....((......(((((....(((((((........((((((.....))))))...)))))))...)))))-----........)).. ( -16.64)
>DroSim_CAF1 42531 93 - 1
GAAAAAACAU-CUGCGGAGAACACGUUGAAAAGUAAACAAAUUUGAAUGUUCUAACUAGGAACAAAGUGUUUACGUGUAACG-----AAGAAAGGCCAA
..........-....((......(((((....(((((((........((((((.....))))))...)))))))...)))))-----........)).. ( -16.64)
>DroEre_CAF1 43604 92 - 1
-AAAAAACAU-CCGCGGAGAACACGUUGAAAAGUAAACAAAUUUGAAUGUUCUAACUAGGAACAAAGUGUUUACGUGUAACA-----AAGAUAGGCCAA
-.........-.((((..(((((((((........))).........((((((.....))))))..)))))).)))).....-----............ ( -17.50)
>DroYak_CAF1 63961 92 - 1
-AUAAAACAU-CUGCAGAGAACACGAUGAAAAGUAAACAAAUUUGAAUGUUCCAACUAGGAACAAAGUGUUUACGUGUAACA-----AAGAAAGGCCAA
-........(-((.......((((..(....)(((((((........((((((.....))))))...)))))))))))....-----.)))........ ( -15.80)
>DroAna_CAF1 41071 84 - 1
-AAAAAACAAUUCAAGCUAAUCGCAAUCGGAUGUAAACAAGUUGG--------------GUGGCAAGUGUUUACGUGUUACGGGAAUAAAAACGGGGAA
-........((((..((.....))..(((.(((((((((..(((.--------------....))).)))))))))....)))))))............ ( -13.60)
>consensus
_AAAAAACAU_CUGCGGAGAACACGUUGAAAAGUAAACAAAUUUGAAUGUUCUAACUAGGAACAAAGUGUUUACGUGUAACG_____AAGAAAGGCCAA
....................((((..(....)(((((((........((((((.....))))))...)))))))))))..................... ( -9.47 = -10.32 +   0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:30 2006