| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,689,922 – 7,690,027 |
| Length | 105 |
| Max. P | 0.746789 |
| Location | 7,689,922 – 7,690,027 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 78.16 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -15.34 |
| Energy contribution | -14.68 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7689922 105 - 27905053 UAAAUUGUUGCAGUUUGUAAAGCAAUUUAUUGCGGUCACAUUUAAGUGAAGCUCUCGGGAGAAUGAGGGGAAU--------------GUGGGUGGUGAAUUAAUUGCGGCAAAAUGUUC ....(((((((((((........(((((((..(..((((((((........((((((......))))))))))--------------)))))..))))))))))))))))))....... ( -28.90) >DroSec_CAF1 39859 105 - 1 UAAAUUGUUGCAGCUUGUAAAGCAAUUUAUUGCGGCCACAUUUAAGUGAAGCUCUCGGGGGAAUGAGGGGAAU--------------GUGGGCGAUGAAUUAAUUGCGGCAAAAUGUUC ....(((((((((((.....)))((((((((((..((((((((........((((((......))))))))))--------------))))))))))))))...))))))))....... ( -34.40) >DroSim_CAF1 39845 105 - 1 UAAAUUGUUGCAGUUUGUAAAGCAAUUUAUUGCGACCACAUUUAAGUGAAGCUCUCGGGGGAAUGAGGGGAAU--------------GUGGGCGAUGAAUUAAUUGCGGCAAAAUGUUC ....(((((((((((........((((((((((..((((((((........((((((......))))))))))--------------)))))))))))))))))))))))))....... ( -33.10) >DroEre_CAF1 40374 104 - 1 UAAAUUCUUGCAGUUUGUAAAGCAAUUUAUAGCAGCCACAUUUAAGUCGAGCUCUCGGGGGAUUGGCGA-CCA--------------GUGGGUGGUGAAUUAAUUGCGGCAAAAUGUUC .........(((.(((((...((((((..((.((.((((......(((((.(((....))).)))))..-...--------------)))).)).))....)))))).))))).))).. ( -28.70) >DroYak_CAF1 40369 94 - 1 UAAAUUGUUGCAGUUUGUAGAGCAAUUUAUUGCGGCCACAUUUAAGUGAAGCUCUCGGGGGAA-------------------------UGGGUGCUGAAUUAAUUGCGGCAAAAUGUUC ....(((((((((((..(((.((((....)))).(((.(((((...(((.....)))...)))-------------------------))))).)))....)))))))))))....... ( -24.30) >DroAna_CAF1 42063 117 - 1 UUAAUUGUUGCGAUUUGUAAACCAAUUUACUGCGGCCACGUCUGAGCUAAAUGUACGGGCGA-CGAGGCGCAGAGCCAAGAGGCUCAAGGGGUGGCCCAUUAAUUACGGG-AAAUGUUC .......((((.....)))).((...(((.((.((((((.((((((((.......((.....-)).(((.....)))....))))).))).)))))))).))).....))-........ ( -34.30) >consensus UAAAUUGUUGCAGUUUGUAAAGCAAUUUAUUGCGGCCACAUUUAAGUGAAGCUCUCGGGGGAAUGAGGGGAAU______________GUGGGUGGUGAAUUAAUUGCGGCAAAAUGUUC ....(((((((((((.(((((....)))))..((.((((((....))....(((....)))..........................)))).)).......)))))))))))....... (-15.34 = -14.68 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:39 2006