Locus 2867

Sequence ID 3R_DroMel_CAF1
Location 7,689,638 – 7,689,731
Length 93
Max. P 0.908748
window4631

overview

Window 1

Location 7,689,638 – 7,689,731
Length 93
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 91.95
Mean single sequence MFE -22.18
Consensus MFE -18.84
Energy contribution -18.96
Covariance contribution 0.12
Combinations/Pair 1.17
Mean z-score -1.63
Structure conservation index 0.85
SVM decision value 1.06
SVM RNA-class probability 0.908748
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7689638 93 + 27905053
ACUAAAAAUAUCUGAGGUAGUCCAACCGA--UGUUCAUGUUCAACCGAACUGAAUAAUGCAGAAGUGUACGUUGGACAUGUGCUUAUUCCUGGGA
..........(((.(((..(((((((...--((((((.((((....)))))))))).((((....)))).)))))))(((....))).))).))) ( -23.80)
>DroSec_CAF1 39550 95 + 1
UCUAAAAAUAUCUGAGGUAGUCCAACCGAUAUGUUCAUGUUCAACCGAACUGAAUAAUACAGUAGUGUACGUUGGACAUGUGCUUAUUCCUGAGA
..........(((.(((..(((((((.....((((((.((((....))))))))))((((....))))..)))))))(((....))).))).))) ( -24.30)
>DroSim_CAF1 39531 95 + 1
ACUAAAAAUAUCUGAGGUAGUCCAACCGAUAUGUUCAUGUUCAACCGAACUGAAUAAUACAGUAGUGUACGUUGGACAUGUGCUUAUUCCUGAGA
..........(((.(((..(((((((.....((((((.((((....))))))))))((((....))))..)))))))(((....))).))).))) ( -24.30)
>DroEre_CAF1 40118 93 + 1
ACUAAAAAUAUCUGAGGUAGUCCAACCGA--UGUUCAUGUUCAAUUGAAAUGAAUAAUAAAGAAGUGUACAUUGGACAUGUGCUUAUUUCUGAGA
..........((.(((((((..((.((((--(((.((((((((.......))))).........))).)))))))...))..).)))))).)).. ( -16.90)
>DroYak_CAF1 40059 93 + 1
ACUAAAAAUAUCUGAGGCAGUCCAGCCGA--UGUUCGUGUUCAAUUGAAAUGAAUAAUACAGAAGUGUACAUUGGACAUGUGCUUAUUUCUGAGA
...............(((......)))..--(((((((.(((....))))))))))...(((((((((((((.....))))))..)))))))... ( -21.60)
>consensus
ACUAAAAAUAUCUGAGGUAGUCCAACCGA__UGUUCAUGUUCAACCGAACUGAAUAAUACAGAAGUGUACGUUGGACAUGUGCUUAUUCCUGAGA
..........(((.(((..(((((((.....((((((.((((....))))))))))((((....))))..)))))))(((....))).))).))) (-18.84 = -18.96 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:38 2006