Locus 2866

Sequence ID 3R_DroMel_CAF1
Location 7,688,026 – 7,688,127
Length 101
Max. P 0.736943
window4630

overview

Window 0

Location 7,688,026 – 7,688,127
Length 101
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 84.68
Mean single sequence MFE -25.30
Consensus MFE -17.89
Energy contribution -17.87
Covariance contribution -0.02
Combinations/Pair 1.18
Mean z-score -2.96
Structure conservation index 0.71
SVM decision value 0.44
SVM RNA-class probability 0.736943
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7688026 101 - 27905053
-AAAAAUUGGGAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUUACUUUUGAGAAUGGCGAGGGAAAAUCGGGA--A
-.............((((((((((.(((((((.....))))))).......(((((....))))).......((((((.......)))))).)))))))))--) ( -26.50)
>DroSec_CAF1 37918 104 - 1
AAAAAAUUGGAAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUAACUUUUGAGAAUGGCGAGGGAAAAUCGGGAAAA
.............(((((((((((.(((((((.....))))))).......(((((....))))).......((((((.......)))))).))))))))))). ( -28.30)
>DroSim_CAF1 37895 102 - 1
AAAAAAUUGGAAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUUACUUUUGAGAAUGGCGAGGGAAAAUCGGGA--A
..............((((((((((.(((((((.....))))))).......(((((....))))).......((((((.......)))))).)))))))))--) ( -26.50)
>DroEre_CAF1 38486 102 - 1
AAAAAAUUGCGAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUUACUUUUAAGAAACGCGAGGGAAAAAUGGGA--A
......(((((...(((((..(((((((((((.....)))).)))))))..(((((....))))).............)))))))))).............--. ( -24.30)
>DroYak_CAF1 38383 97 - 1
GAAGG-----AAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUUACUUUUGAGAAUGGCGAGCGAAAAAUGGGA--A
.....-----.....((((.((((.(((((...((...(.((((((((...(((((....)))))....))).))))).)....))..))))))))).)))--) ( -22.60)
>DroAna_CAF1 40568 95 - 1
----AAUUGAAAAUCUGCUGAUUUAUUUGUGCAGCCAGCGCGAAAUGAAAAAUUGCGUAAGCGGAGAAAUUACUUUCAAG-----CUGAGGAGCACCGUGCACA
----......(((((....)))))...((((((((..((((((.........))))))..))((.((((....))))..(-----((....))).)).)))))) ( -23.60)
>consensus
AAAAAAUUGGAAAUUUUCUGAUUUAUUUGCGCAGCAAGCGCGAAAUGAAAAAUUGCGUAAGCAGUGGAAUUACUUUUGAGAAUGGCGAGGGAAAAUCGGGA__A
.............((((((..(((((((((((.....)))).)))))))..(((((....))))).......................)))))).......... (-17.89 = -17.87 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:37 2006