| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,687,109 – 7,687,222 |
| Length | 113 |
| Max. P | 0.540930 |
| Location | 7,687,109 – 7,687,222 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.33 |
| Mean single sequence MFE | -40.13 |
| Consensus MFE | -28.04 |
| Energy contribution | -28.98 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7687109 113 - 27905053 CUGUUGUUAUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGGCCUGUCUGCCCUCGGGCCAGAACGAAAAUA--U----AGGCCAAGAAGGGUUCGGAGCUGAAAGGGAACUUCAGUUUGU- ...(((....(((((.......(..(((((.(..((((((((((((((((....)).)))).........--)----)))))))))..)....)))))..)...)))))..))).....- ( -35.90) >DroSec_CAF1 37002 113 - 1 CUGUUGUUCUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGGCCUGUCUGCCCUCGGGCCAGAACGAAAAUA--U----GGGCCAAGAAGGGUUCGGAGCUGAAAGGGAACUUCAGUUUGU- (((..((((((((((..((((.(((((.((((..((((((((((........)))))))))).......)--)----)))))))....)))).)))))......)))))..))).....- ( -41.60) >DroSim_CAF1 37003 113 - 1 CUGUUGUUCUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGGCCUGUCUGCCCUCGGGCCAGAACGAAAAUA--U----GGGCCAAGAAGGGUUCGGAGCUGAAAGGGAACUUCAGUUUGU- (((..((((((((((..((((.(((((.((((..((((((((((........)))))))))).......)--)----)))))))....)))).)))))......)))))..))).....- ( -41.60) >DroEre_CAF1 37553 113 - 1 CUGUUGUUUUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGGCCUGUCUGCCCUCGGGCCAGAACGAAAAUA--U----GGGCCAAGAAGGGUUCGGCGCUGGAAAGGAACUUUAGUUCGU- (((..((((..(((((..(((.(((((.((((..((((((((((........)))))))))).......)--)----)))))))((.....)))))..)))))..))))..))).....- ( -42.20) >DroYak_CAF1 37427 116 - 1 GUGUUGCUUUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGCCCUGUCUGCCCUCGGGCCAGAACGAAAGUAUUU----GGGCCAAGAAGGGUUCGGGACGCGAAAGGAACUUUAGUUCGUU .....(((..(((((..((((...))))......((((((((((...(((((.((.(((((((....)).)))----)).))....))))).))))..)))))))))))...)))..... ( -41.10) >DroAna_CAF1 39607 102 - 1 CCGUUGUUUUGG-CCAUGGCCAUUGGCUCCAUUAUUUUGGUCU-UCUGCCC-CGGGCCAGGACGAUGAGU--CGGCGGGGCCUGAAUGGGAGCGGAGC-------------AAGUUCGCC .(((((((((((-((..(((....((..(((......))).))-...))).-..)))))))))))))...--.(((((.(((((........))).))-------------....))))) ( -38.40) >consensus CUGUUGUUUUGUUCCAUGGCCAUUGGCUCCAUUAUUUUGGCCUGUCUGCCCUCGGGCCAGAACGAAAAUA__U____GGGCCAAGAAGGGUUCGGAGCUGAAAGGGAACUUCAGUUCGU_ .....((((((..((.(((((..((....))(..((((((((((........))))))))))..).............))))).....))..)))))).......((((....))))... (-28.04 = -28.98 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:36 2006