Locus 2860

Sequence ID 3R_DroMel_CAF1
Location 7,681,537 – 7,681,655
Length 118
Max. P 0.924913
window4621

overview

Window 1

Location 7,681,537 – 7,681,655
Length 118
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 93.16
Mean single sequence MFE -42.17
Consensus MFE -38.20
Energy contribution -38.95
Covariance contribution 0.75
Combinations/Pair 1.13
Mean z-score -1.56
Structure conservation index 0.91
SVM decision value 1.17
SVM RNA-class probability 0.924913
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7681537 118 - 27905053
CCGUUAGCGGCAGCCCGUGAAACUUGGCUCAUGGCCUCGUGGCCCAUUCAGCUGCGGCCCAGGCCAAAAAGUUUGGCCAAAACGGAUGCGUCAAGUUGAAUGGCUAUAAAAGCGUUGA
(((....)))((((.(((..((((((((.(((((((..(..((.......))..)))))..((((((.....)))))).......))).))))))))..)))(((.....))))))). ( -43.40)
>DroSec_CAF1 31475 118 - 1
CCGUUAGCGGCAGCCCGUGGAACUUGGCUCAUGGCCUCGUAGCCCAUUCAGCUGCGGCCCAGGCCAAAAAGUUUGGCCAAAACGGAUGCGUCAAGUUGAAUGGCUAUAAAAGCGUUGA
(((....)))((((.(((..((((((((.(((((((..(((((.......)))))))))..((((((.....)))))).......))).))))))))..)))(((.....))))))). ( -44.20)
>DroSim_CAF1 31492 118 - 1
CCGUUAGCGGCAGCCCGUGGAACUUGGCUCAUGGCCUCGUGGCCCAUUCAGCUGCGGCCCAGGCCAAAAAGUUUGGCCAAAACGGAUGCGUCAAGUUGAAUGGCUAUAAAAGCGUUGA
(((....)))((((.(((..((((((((.(((((((..(..((.......))..)))))..((((((.....)))))).......))).))))))))..)))(((.....))))))). ( -43.00)
>DroEre_CAF1 32111 118 - 1
CCGUUCGCGGCAGCCCGUGAAACUUGGCUCAUGGCCUCGUGGCCCAUUCAGCUGCGGCCCAGGCCAAAAAGUUUGGCCAAAACGGAUGCGUCAAGUUGAAUGGCUAUAAAAGCGUUGA
(((....)))((((.(((..((((((((.(((((((..(..((.......))..)))))..((((((.....)))))).......))).))))))))..)))(((.....))))))). ( -43.40)
>DroYak_CAF1 31750 118 - 1
CCGUUAGCGGCAGCCCAUGGAACUUGGCUCAUGGCCUCGUGGCCCAUUCAGCUGCGGCCCAGGCCAAAAAGUUUGGCCAAAACGGAUGCGUCAAGUUGAAUGGCUAUAAAAGCGUUGA
(((....)))((((.(((..((((((((.(((((((..(..((.......))..)))))..((((((.....)))))).......))).))))))))..)))(((.....))))))). ( -43.40)
>DroAna_CAF1 33972 109 - 1
UCGUUAGCGA---CUCAUGGAACU------ACGGCCCCGUGGCCCUUUCAGCUCUGGCUCGGGCCAAAAAGUUUGGCCAAAACGGAUGCGUCAAGUUGAAUGGCUAUAAAAGCGUUGA
...((((((.---(((((((..(.------...)..)))))(((..(((((((.((((...((((((.....)))))).....(....)))))))))))).)))......)))))))) ( -35.60)
>consensus
CCGUUAGCGGCAGCCCGUGGAACUUGGCUCAUGGCCUCGUGGCCCAUUCAGCUGCGGCCCAGGCCAAAAAGUUUGGCCAAAACGGAUGCGUCAAGUUGAAUGGCUAUAAAAGCGUUGA
(((....)))((((.(((..((((((((.(((((((..(((((.......)))))))))..((((((.....)))))).......))).))))))))..)))(((.....))))))). (-38.20 = -38.95 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:28 2006