Locus 286

Sequence ID 3R_DroMel_CAF1
Location 1,108,640 – 1,108,733
Length 93
Max. P 0.883018
window487

overview

Window 7

Location 1,108,640 – 1,108,733
Length 93
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 80.13
Mean single sequence MFE -30.42
Consensus MFE -17.96
Energy contribution -18.88
Covariance contribution 0.92
Combinations/Pair 1.21
Mean z-score -2.38
Structure conservation index 0.59
SVM decision value 0.92
SVM RNA-class probability 0.883018
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1108640 93 - 27905053
UAU-GUGGAGCGUUAGAGCUUUCAAACAGUGCUAGCCCAAAAAGUGGGACACCCCCACGCACGAAAGCUUUUG-CAUCUGCUACCUCUGCCCGCU
...-((((.((...(((((((((.....((((...........(((((.....)))))))))))))))))).(-(....)).......)))))). ( -28.20)
>DroSec_CAF1 42244 93 - 1
UAU-GUGGAGCGCCAGAGCUUUCGAACAGUGCUAGCCCAAAUAGUGGGACACCCCCACGCACGAAAGCUUUUG-CAGCUGCUACCGCUGCCCGCU
...-((((.((((.((((((((((....((....)).......(((((.....)))))...)))))))))).)-)(((.......))))))))). ( -34.70)
>DroSim_CAF1 42267 93 - 1
UAU-GUGGAGCGCCAGAGCUUUCGAACAGUGCUAGCCCAAAUAGUGGGACACCCCCACGCACGAAAGCUUUUG-CAGCUGCUACCGCUGCCCGCU
...-((((.((((.((((((((((....((....)).......(((((.....)))))...)))))))))).)-)(((.......))))))))). ( -34.70)
>DroEre_CAF1 43353 90 - 1
UAU-GUGGAGCGCCAGAGCUUUCGCACAGUGCUAGCCCAAAAAGUGGGACACCCC-ACACACGAAAGCUUUUG-CAGCUGCUACCGCUGCU--CU
...-..(((((((.(((((((((((.....))...........(((((....)))-))....))))))))).)-)(((.......))))))--)) ( -33.50)
>DroYak_CAF1 63720 81 - 1
UAU-GUGGAGCGCCAAAGCUUUCUCACAGUGCUAGCCCAAAAAGUGGGACAUCCC--CACACGAAAGCUUUUG-CAGCUGCUACC----------
...-(((((((((.(((((((((.....((....)).......(((((.....))--)))..))))))))).)-).))).)))).---------- ( -29.00)
>DroAna_CAF1 40812 83 - 1
GAGCAAUGAGCGCCAAAGCUCCAACACAGUGCUAGCCAUAAAAGUGGGACACCCUC-------AAAGCUUUGGUCAGCUGUUUCUUGUUC-----
((((((.(((((((((((((........(((....((((....))))..)))....-------..))))))))).....)))).))))))----- ( -22.44)
>consensus
UAU_GUGGAGCGCCAGAGCUUUCGAACAGUGCUAGCCCAAAAAGUGGGACACCCCCACGCACGAAAGCUUUUG_CAGCUGCUACCGCUGCC__CU
....(((((((.(.(((((((((.....((....)).......(((((.....)))))....))))))))).)...))).))))........... (-17.96 = -18.88 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:29 2006