Locus 2858

Sequence ID	3R_DroMel_CAF1
Location	7,678,887 – 7,678,978
Length	91
Max. P	0.988939

overview

Window 7

Location	7,678,887 – 7,678,978
Length	91
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	91.63
Mean single sequence MFE	-15.14
Consensus MFE	-13.32
Energy contribution	-14.20
Covariance contribution	0.88
Combinations/Pair	1.11
Mean z-score	-1.91
Structure conservation index	0.88
SVM decision value	2.14
SVM RNA-class probability	0.988939
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7678887 91 - 27905053
CAAUGACGCCAACAAUGAAAAAAAUUCGUUGUAAUGAAAUUAAAUAUGUAUAUUUGCAUAUGAACCGAUGGCAAUAAA--AAAGAACUGAAGU
.......((((((((((((.....))))))))...........(((((((....))))))).......))))......--............. ( -18.40)
>DroSec_CAF1 28834 92 - 1
CAAUGACGCCAACAAUGAAAAAAAUUCGCUGUAAUGAAAUUAAAUAUGUAUAUUUGCAUAUGAACCGUUGGCCAUAAAA-AAAGAACUAAAGU
.......((((((...........((((......)))).....(((((((....))))))).....)))))).......-............. ( -15.50)
>DroSim_CAF1 28891 93 - 1
CAAUGACGCCAACAAUGAAAAAAAUUCGUUGUAAUGAAAUUAAAUAUGUAUAUUUGCAUAUGAACCGUUGGCAAUAAAAAAAAGAACUAAAGU
.......((((((((((((.....)))))).............(((((((....))))))).....))))))..................... ( -18.60)
>DroEre_CAF1 29379 90 - 1
CAAUGACGCCAACAAUGAAAA-AAUUUUUAGUAAUGAAAUUAAAUAUGUAUAUUUGCAUACGAGCCGAUGGUAAUAAA--AAAGAACUGUAGU
.......((((.(........-...(((((....))))).....((((((....))))))......).))))......--............. (  -9.90)
>DroYak_CAF1 29015 90 - 1
CAAUGACGCCAACAAUGAAAA-AAUUCGUAGUAAUGAAAUUAAAUAUGUAUAUUUGCAUAUGAACCGAGGGCAAUGAA--AAAGAACUGCAGU
.......(((.((.(((((..-..))))).))...........(((((((....)))))))........)))......--............. ( -13.30)
>consensus
CAAUGACGCCAACAAUGAAAAAAAUUCGUUGUAAUGAAAUUAAAUAUGUAUAUUUGCAUAUGAACCGAUGGCAAUAAA__AAAGAACUGAAGU
.......((((((((((((.....))))))))...........(((((((....))))))).......))))..................... (-13.32 = -14.20 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:24 2006