| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,678,633 – 7,678,728 |
| Length | 95 |
| Max. P | 0.741630 |
| Location | 7,678,633 – 7,678,728 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 78.97 |
| Mean single sequence MFE | -27.19 |
| Consensus MFE | -16.34 |
| Energy contribution | -16.52 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7678633 95 - 27905053 CGGCUCGCAAGC-AGGCAGGUGAAAGGGGGGUGGUGCAACCAGUGCGGUCAGCUAAAUGGCCACCAAAA-AAC------------AAGAAGGGAGCUGAAAAUAAAAUU ((((((((....-..)).(((......(.(.(((.....))).).)(((((......))))))))....-...------------.......))))))........... ( -26.20) >DroSec_CAF1 28579 93 - 1 CGGCUCGCAAGC-AGGCAGGUGCAAGG-GGGUGUUGCAACCAGUGCGGUCAGCUAAAUGGCCACCAA-A-AAC------------AAGAAGGGAGCUAAAAAUAAAAUU .(((((((....-..)).((((((...-.(((......)))..)))(((((......))))))))..-.-...------------.......)))))............ ( -26.60) >DroSim_CAF1 28635 93 - 1 CGGCUCGCAAGC-AGGCAGGUGCAAGG-GGGUGUUGCAACCAGUGCGGUCAGCUAAAUGGCCACCAA-A-AAC------------AAGAAGGGAGCUGAAAAUAAAAUU ((((((((....-..)).((((((...-.(((......)))..)))(((((......))))))))..-.-...------------.......))))))........... ( -28.60) >DroEre_CAF1 29137 93 - 1 UGGUUUGCAAGC-CGGCAGGUGAAAGA-GGGUGGUGCAACCAGUGCGGUCAGCUAAAUGGCCACCAA-A-AAC------------AAGAAGGGAGCUGAAAAUAAAAUU (((((.(((.((-(..(........).-.)))..))))))))..(((((((......))))).((..-.-...------------.....))..))............. ( -21.60) >DroYak_CAF1 28760 96 - 1 UGGUUGGUAUGCACGGCAGGUAAAAGGGGGGUGGUGCAACCAGUGCGGUCAGCUAAAUGGCCACCAA-AAAAC------------AGGAUGGGAGCUGAAAAUAAAAUU ((((((((.(((((.((.............)).)))))))))....(((((......))))))))).-....(------------((........)))........... ( -25.02) >DroAna_CAF1 31520 100 - 1 GGUGGCGUCGGC-G-CUCGGCGCUUUG-G----GGGCAACCACUGCGGUCGGCUAACUGGCCGCCGA-A-AAAAGAAUCGAGUAGAGGGCGGGAGCAGAAAAUAAAAUU ....((..(.((-.-((((((((..((-(----......)))..))((((((....)))))))))((-.-.......)).....))).)).)..))............. ( -35.10) >consensus CGGCUCGCAAGC_AGGCAGGUGAAAGG_GGGUGGUGCAACCAGUGCGGUCAGCUAAAUGGCCACCAA_A_AAC____________AAGAAGGGAGCUGAAAAUAAAAUU ((((((.(..((...)).(((..............(((.....)))(((((......)))))))).........................).))))))........... (-16.34 = -16.52 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:22 2006