Locus 2855

Sequence ID 3R_DroMel_CAF1
Location 7,673,782 – 7,673,884
Length 102
Max. P 0.878013
window4613

overview

Window 3

Location 7,673,782 – 7,673,884
Length 102
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 82.49
Mean single sequence MFE -24.34
Consensus MFE -15.52
Energy contribution -16.28
Covariance contribution 0.76
Combinations/Pair 1.16
Mean z-score -2.28
Structure conservation index 0.64
SVM decision value 0.90
SVM RNA-class probability 0.878013
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7673782 102 - 27905053
AAAUUAAAUCUUAAGUCCCACUCGUAAUGACCAAAAGUUGUCUAAUUUUAGAUAGUAG---GGCACCACCCUGAUGAUGCUCAUGCAUAUGUAUGGGCAUCCGCA
.....................................(((((((....)))))))(((---((.....)))))..(((((((((((....))))))))))).... ( -25.80)
>DroSec_CAF1 23737 102 - 1
AAAUUAAAUCUUAAAUCCCACUCGUAAUGACCAAGAGUUGUCUAAUUUUAGAUAGUAG---GGCACCACCCUGACGAUGCUCAUGCAUAUGUAUGGGCAUCCGCA
...................((((...........))))((((((....))))))((((---((.....)))).))(((((((((((....))))))))))).... ( -28.00)
>DroSim_CAF1 23466 102 - 1
AAAUUAAAUCUUAAAUCCCACUCGUAAUGACCAAAAGUUGUCUAAUUUUAGAUAGUAG---GGCACCACCCUGAUGAUGCUCAUGCAUAUGUAUGGGCAUCCACA
.....................................(((((((....)))))))(((---((.....)))))..(((((((((((....))))))))))).... ( -25.80)
>DroEre_CAF1 24083 98 - 1
ACAUUAGAUGUUAAAUCC-ACUCGUAAUGACCAACAGUUUUCCAAUUUUAGAGAGCAG---GGCACCACCCUG---AUGCUCAUGCAUAUGUAUAGGCAUCGACA
.(((((((.((.......-)))).))))).......((((((........))))))((---((.....))))(---((((..((((....))))..))))).... ( -24.00)
>DroYak_CAF1 23421 87 - 1
AAAUAAAGUUCUAAAUCC-------------CA--AGUUGUCUAAUUUUUGAGAACAGAAAGGCACCACCCUG---AUGCUCAUGCAUAUGUAUAGGCAUCGACG
.......(((........-------------..--.(.(((((...(((((....)))))))))).).....(---((((..((((....))))..)))))))). ( -18.10)
>consensus
AAAUUAAAUCUUAAAUCCCACUCGUAAUGACCAAAAGUUGUCUAAUUUUAGAUAGUAG___GGCACCACCCUGA_GAUGCUCAUGCAUAUGUAUGGGCAUCCACA
....................................((((((((....))))))))...................(((((((((((....))))))))))).... (-15.52 = -16.28 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:20 2006