Locus 2854

Sequence ID 3R_DroMel_CAF1
Location 7,673,099 – 7,673,194
Length 95
Max. P 0.795435
window4612

overview

Window 2

Location 7,673,099 – 7,673,194
Length 95
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 94.48
Mean single sequence MFE -24.80
Consensus MFE -21.52
Energy contribution -22.05
Covariance contribution 0.53
Combinations/Pair 1.03
Mean z-score -1.64
Structure conservation index 0.87
SVM decision value 0.60
SVM RNA-class probability 0.795435
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7673099 95 + 27905053
GGCGGUUGAGCAAAG-CAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA
(((((.((.((((((-((..((((......))))..))).........(((...((((.....)))).))).........))))).))..))))). ( -26.60)
>DroSec_CAF1 23080 95 + 1
GGCGGUUGAGCAAAG-CAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA
(((((.((.((((((-((..((((......))))..))).........(((...((((.....)))).))).........))))).))..))))). ( -26.60)
>DroSim_CAF1 22782 95 + 1
GGCGGUUGAGCAAAG-CAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA
(((((.((.((((((-((..((((......))))..))).........(((...((((.....)))).))).........))))).))..))))). ( -26.60)
>DroEre_CAF1 23311 95 + 1
GGCGGUUGAGCCAAG-CAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA
(((((((((((....-..)).)))))..((((..((((((((((......)))))....)))))..)))).......((((......)))))))). ( -25.10)
>DroYak_CAF1 22606 96 + 1
GGCGGUUGAGCAAAGCCAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA
(((((.((.(((((((((..((((......))))..(((.........))).))))...((((....)))).........))))).))..))))). ( -25.10)
>DroAna_CAF1 25872 89 + 1
GGAGGUUGCG------CGGCUUGAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCACAGCAUUUGCAUGCAUUUUAGAAUUUGUA-GUUCCGCCG
..........------((((..((((....(((((((....)))))))(((...(((.......))).)))...............-)))).)))) ( -18.80)
>consensus
GGCGGUUGAGCAAAG_CAGCAUCAACAUCAUGAUAAUGCCCAUUAUUAGCAGUGGCAAAGCAUUUGCAUGCAUUUUAGAAUUUGUAUAUUCCGCCA
(((((((((((.......)).)))))..((((..((((((((((......)))))....)))))..)))).......((((......)))))))). (-21.52 = -22.05 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:19 2006