Locus 2853

Sequence ID 3R_DroMel_CAF1
Location 7,672,307 – 7,672,420
Length 113
Max. P 0.996783
window4611

overview

Window 1

Location 7,672,307 – 7,672,420
Length 113
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 89.77
Mean single sequence MFE -20.42
Consensus MFE -17.33
Energy contribution -17.69
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -2.46
Structure conservation index 0.85
SVM decision value 2.75
SVM RNA-class probability 0.996783
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7672307 113 + 27905053
ACG--CACGCAGACAUCUUAUUCCGGCAAAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCUCUCCUUAUCUGCUUUCCUCUGCCACUUCCUUGUGCCC---UCUUCAUGGGAUUCAU
...--...(((((...........(((((((....)))))))........((((.................))))....)))))(((......)))(((---.......)))...... ( -21.53)
>DroSec_CAF1 22314 116 + 1
ACG--CACGCAGACAUCUUAUUCCGGCAAAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCUCUCCUUAUCUGCUUUCCUCUGCCACUUCCUUGUGCCCGCUUCUUCAUGGGAUUCAU
...--...(((((...........(((((((....)))))))........((((.................))))....)))))(((......)))((((........))))...... ( -21.33)
>DroSim_CAF1 21992 116 + 1
ACG--CACGCAGACAUCUUAUUCCGGCAAAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCUCUCCUUAUCUGCUUUCCUCUGCCACUUCCUUGUGCCCGCUUCUUCAUGGGAUUCAU
...--...(((((...........(((((((....)))))))........((((.................))))....)))))(((......)))((((........))))...... ( -21.33)
>DroEre_CAF1 22537 110 + 1
AUA--CGCGCAGACAUCUUAUUCCGGCACAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCCCUCCUUAUCUGUUUUCCUCUGCCACUUCCUUGUGCCCCCC-UUUCAUGGGA-----
...--...(((((...........((((.((....)).))))........((((.................))))....)))))(((......)))...(((-......))).----- ( -16.23)
>DroYak_CAF1 21803 113 + 1
AUAGACACGCAGACAUCUUAUUCCGGCAAAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCCCUCCUUAUCUGUGUUCCUCUGCAACUACCUUGUGCCCCCCAUUUCGUGGGA-----
..(((.(((((((...........(((((((....)))))))..((....)).................)))))))...)))(((.(......))))..(((((...))))).----- ( -21.70)
>consensus
ACG__CACGCAGACAUCUUAUUCCGGCAAAUUCAAAUUUGCCAACUCAUCAGCAAAAUCUCUCUCCUUAUCUGCUUUCCUCUGCCACUUCCUUGUGCCCCCCUCUUCAUGGGAUUCAU
........(((((...........(((((((....)))))))........((((.................))))....)))))(((......)))(((..........)))...... (-17.33 = -17.69 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:46:18 2006